Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1144 ATGGAGGAAGCGCTGGAACTGTCGCGCGCGAAGGACACGAAGGAGAGGATGGCGGGCGTGGAGCGCCTCTACCAACTTCTAGAAGCTTCCAGAAAGAGCCTCTCCTCCTCGGAAGTGACCTCGCTTGTCGACACGTGTATGGATCTCTTGAAGGACAACAACTTCCGCGTCTCGCAGGGCGCGCTCCAGGCGCTCGCCTCCGCCGCCGTGCTCTCCGGTGACCACTTCAAGCTCCACTTCAACGCCCTCCTCCCTGCCGTCGTCGATCGCCTCGGCGACTCCAAACAGCCCGTTCGCGACGCCGCCAGGCGCCTCCTCCTCACTCTCATGGAGGTTTCTTCTCCTACAATAATTGTTGAAAGAGCAGGGTCCTTTGCTTGGGCACATAAAAGCTGGAGAGTTAGAGAGGAGTTTACACGAACTGTCACAGCTGCAATTAATCTATTTGCATCTACTGAGCTTCCACTTCAACGGGCTATCCTTCCCCCTGTTTTGCATTTGCTTAATGATCCAAATCCTGCTGTTAGGGAAGCAGCTATTTTGTGCATTGAGGAGATGTATACACAAGCTGGGTCTCAATTTCGTGATGAACTTCACCGCCGCAATCTTCCTTCATCTTTGGTGAAAGATATTAATGCCAGGCTTGAGGGAATTCAACCAAAAGTTCGCTCATCTGATGGTATTCCAAGTGGTTATATTACTGGGCAAATTAAGCATTTGAGTGTTAATCCTAAGAAAAGTAGTCCAAAGGCTAAAAGTTCCTCAAGGGAGATCTCTCTTCTTGGAGGAGAAGGTGACGTCACTGAGAAACCCATAGACCCTGTCAAGGTATATTCAGATAAGGAGTTAATCAGGGAAATTGAGAAGATTGCATCTACCCTTGTGCCTGAAAAAGACTGGTCAATTCGAATTGCTGCTATGCTGAGAGTTGAAGGTCTTGTTCTAGGAGGTGCTGCGGATTATCCGTGTTTTCGTGGGCTCCTGAAGCAACTTGTTGGACCTTTAAGCACACAATTGTCAGACAGAAGATCCAGCATTGTGAAGCAGGCTTGCCATCTATTGTGCTTTTTGTCAAAGGAACTCTTGGGTGATTTTGAAGCATGTGCTGAAATGTTTATACCAGTCCTTTTCAAGCTGGTTGTGATTACTGTGCTTGTAATTGCAGAGTCTGCAGATAACTGCATAAAAACGATGCTGCGCAACTGCAAAGTTGCTCGTGTGCTTCCCCGTATAGCTGATTGTGCAAAAGGTGATCGCAATTCACTACTTCGTGCAAGGTGTTGTGAATATGCTCTTTTGGTCCTAGAACATTGGCCTGATGCACCAGAAATACATCGATCAGCTGATTTATATGAGGATATGATAAAGTGTTGTGTTTCAGACGCAATGAGTGAGGTACGATCTACTGCAAGGATGTGCTACAGAATGTTTGCAAAAACTTGGCCAGAGCGTTCTCGTCGCCTATTTTCATCCTTTGACCCTACTATTCAACGGTTAATAAATGAAGAGGATGGAGGAATACATCGGCGACATGCTTCACCTTCCATTCGAGATAGAGGTGCATTGATGTCATTACCCAACCAAACCTCTGCTCCCTCTAATCTACCTGGTTATGGAACTTCTGCTATTGTCGCAATGGATAGAAGTTCAAGTATATCATCAGGGACAACTATCTCCTCTGGCATACTTCTTTCACAAACTAAGTCTAGCAAGGGTGCAGAACGTAGTTTGGAAAGCATGTTACATGCAAGCAAACAGAAGGTTACTGCTATTGAAAGCATGCTTAGAGGCTTGGATTTGTCTGATAAGCATAATTCATCTTCTCTCCGGTCATCAAGTTTGGATCTAGGAGTTGACCCTCCATCATCTCGTGATCCACCTTTCCCTGCTGCTGTCCCGGCATCTAATCATCTGACAAGCTCTTTAACAACAGAATCAACTGCCTCTGGCATCAATAAAGGTAGTAACCGAAATGGTGGTCTGGGTTTGTCTGACATAATCACTCAGATTCAAGCTTCGAAAGATTCTGCCAAGTTATCCTATCATAGCAATGTTGGTATTGAGCCTTTATCATTATATTCGAGTAAAAGGGCCTCTGAAAGATTACAAGAAAGAAGTTCTGTTGATGATAACAGTGATATTAGGGAGGCTAGGCGATTTATGAACTCCAACACTGATAAACAGTATTTGGATGCCCCCTATAGAGATGGAAACTTTAGGGAATCACATAATAGTTATGTGCCTAATTTCCAGAGACCACTATTGAGAAAGAATGTGGCTGGACGTATATCTGCTGGCAGGAGGAGGAGTTTTGATGATAATCAACTATCTCTTGGAGAGATGTCAAATTATGCAGATGGACCAGCATCTCTTCATGAAGCTTTGAGTGAAGGACTTAGTTCAGGTTCCGACTGGTCTGCTAGGGTTGCTGCCTTTAATTATCTTCATTCTTTGTTGCAGCAAGGTCCAAAGGGAACTCTAGAAGTAGTCCAGAATTTTGAGAAGGTAATGAAGTTGTTTTTCCAGCACTTGGATGATCCCCATCATAAAGTTGCACAGGCTGCTCTTTCAACACTTGCAGATATTGTTCCAGCATGCCGAAAGCCTTTCGAGGGTTACATGGAAAGAGTATTACCCCATGTGTTTTCTCGGTTAATTGACCCTAAAGAACTTGTCAGACAGCCATGTTCAACAACTTTGGACGTTGTTAGCAAAACTTACAGTATAGATTCTCTCTTACCTGCATTATTACGCTCACTAGATGAGCAAAGGTCTCCGAAGGCTAAATTGGCTGTTATTGAATTTGCAATCAATTCCTTTAACAAACATGCTATGAATCCAGAAGGTGCTGCTAATATTGGCATCCTAAAATTATGGCTTGCTAAGTTAACCCCTTTGGTTCATGACAAAAATACAAAGCTTAAAGAAGCAGCTATTACATGCATTATATCAGTGTACTCTCACTTTGATTCGACTGCAGTTCTTAATTTCATTCTGAGTTTGTCTGTTGAAGAACAAAATTCTTTGAGACGAGCGTTGAAACAATACACCCCTCGCATTGAAGTAGACCTAATAAACTATCTGCAGAACAAGAAAGAGAGACAACGTTCTAAATCTTCCTATGATCCATCTGATGTTGTGGGAACATCCTCTGAAGATGGATATGTTGGTTACTCTAGGAAGGCTAATTACCTTGGAAGGTATTCTGGTGGTTCCcttgatggtgatggtggcaggAAATGGAGTTCCCAAGATTCCACACTGATGAAAGCCAGTCTTGGTCAAGCAGCTTCTGGTGAAACTCGGGAACATCTGTTTCATAATTTTGAGACTGATCCTAATAGTGGTAGACTtggttcaaaaaataaagatctTGCTTATGCAGTCAATTCAATGGGTCAAAACTTTGGCTCTCAAACTAGCCAACATGGACATGTAGACAGTAGCATGAACTTCGAGGGTCTTTCAACTCCTCGTCTAGATGCTAACGGTTTGATGTCATTAGAGCATTTAAATGTTGCTGAAGGCTATGTAAATGACAAAGAACATCCTTCTGAATTGGAACTTAATCATCACTTAGCTGAGGATATAAAGATTAACTCCATGACAGACTCAGGACCCAGCATTCCTCAAATTCTTCATACGATATGCAGTGGGGGTGATGGAAGCCCTATTTCAAGTAAACGGACTGCACTTCAGCAATTAGTTGAGGCTTCTATAACAGATGATCATTCTGTTTGGACGAAGTACTTCAATCAGATTTTGACAGTTGTGCTTGAGGTGTTGGATGATTCAGATTCCTCAGTCAAAGAGCTTGCTCTTTCACTGATAGTTGAAATGCTTAAGAACCAGAAGGGTGCCATGGAGAATTCTGTTGAGATTGTAATTGAGAAGCTGCTTCATGTTACAAAAGATACCATTCCTAAGGTCTCGAATGAAGCAGAGCACTGCCTGACCATTGTTTTATCTCAGTATGATCCATTCAGATGTTTAAGTGTCATTGTCCCTCTACTGGTTACCGAGGATGAGAAAACACTGGTCATTTGCATAAATTGCTTAACAAAGCTTGTGGGCCGGCTTTCTCAGGAGGAACTGATGGCTCAGTTACCCTCATTTCTGCCTGCTCTATTCGAAGCTTTTGGTAACCAGAGTGCAGATGTTCGTAAGACCGTTGTTTTCTGTCTCGTGGATATATATATCATGCTTGGGAAAGCATTCTTACCATATTTGGAAGGGCTTAACAACACACAGTTGAAGTTGGTCACCATTTATGCAAATCGAATCTCACAAGCCAGGACAGGCAAAGCAGTAGATGCGGTTCATGATTAG 4329 0.4283 MEEALELSRAKDTKERMAGVERLYQLLEASRKSLSSSEVTSLVDTCMDLLKDNNFRVSQGALQALASAAVLSGDHFKLHFNALLPAVVDRLGDSKQPVRDAARRLLLTLMEVSSPTIIVERAGSFAWAHKSWRVREEFTRTVTAAINLFASTELPLQRAILPPVLHLLNDPNPAVREAAILCIEEMYTQAGSQFRDELHRRNLPSSLVKDINARLEGIQPKVRSSDGIPSGYITGQIKHLSVNPKKSSPKAKSSSREISLLGGEGDVTEKPIDPVKVYSDKELIREIEKIASTLVPEKDWSIRIAAMLRVEGLVLGGAADYPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESADNCIKTMLRNCKVARVLPRIADCAKGDRNSLLRARCCEYALLVLEHWPDAPEIHRSADLYEDMIKCCVSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSFDPTIQRLINEEDGGIHRRHASPSIRDRGALMSLPNQTSAPSNLPGYGTSAIVAMDRSSSISSGTTISSGILLSQTKSSKGAERSLESMLHASKQKVTAIESMLRGLDLSDKHNSSSLRSSSLDLGVDPPSSRDPPFPAAVPASNHLTSSLTTESTASGINKGSNRNGGLGLSDIITQIQASKDSAKLSYHSNVGIEPLSLYSSKRASERLQERSSVDDNSDIREARRFMNSNTDKQYLDAPYRDGNFRESHNSYVPNFQRPLLRKNVAGRISAGRRRSFDDNQLSLGEMSNYADGPASLHEALSEGLSSGSDWSARVAAFNYLHSLLQQGPKGTLEVVQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIVPACRKPFEGYMERVLPHVFSRLIDPKELVRQPCSTTLDVVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFAINSFNKHAMNPEGAANIGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYSHFDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLINYLQNKKERQRSKSSYDPSDVVGTSSEDGYVGYSRKANYLGRYSGGSLDGDGGRKWSSQDSTLMKASLGQAASGETREHLFHNFETDPNSGRLGSKNKDLAYAVNSMGQNFGSQTSQHGHVDSSMNFEGLSTPRLDANGLMSLEHLNVAEGYVNDKEHPSELELNHHLAEDIKINSMTDSGPSIPQILHTICSGGDGSPISSKRTALQQLVEASITDDHSVWTKYFNQILTVVLEVLDDSDSSVKELALSLIVEMLKNQKGAMENSVEIVIEKLLHVTKDTIPKVSNEAEHCLTIVLSQYDPFRCLSVIVPLLVTEDEKTLVICINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLEGLNNTQLKLVTIYANRISQARTGKAVDAVHD 1442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1144 1442 Pfam CLASP N terminal 284 500 IPR024395 -
Ssu4g1144 1442 Pfam CLASP N terminal 799 993 IPR024395 -
Ssu4g1144 1442 MobiDBLite consensus disorder prediction 634 657 - -
Ssu4g1144 1442 MobiDBLite consensus disorder prediction 601 618 - -
Ssu4g1144 1442 PANTHER PROTEIN, PUTATIVE-RELATED 28 1434 - -
Ssu4g1144 1442 SMART TOG_3 777 1026 IPR034085 -
Ssu4g1144 1442 SMART TOG_3 270 514 IPR034085 -
Ssu4g1144 1442 SMART TOG_3 1198 1434 IPR034085 -
Ssu4g1144 1442 SMART TOG_3 3 224 IPR034085 -
Ssu4g1144 1442 SUPERFAMILY ARM repeat 7 402 IPR016024 -
Ssu4g1144 1442 MobiDBLite consensus disorder prediction 601 657 - -
Ssu4g1144 1442 Gene3D - 1 221 IPR011989 -
Ssu4g1144 1442 Gene3D - 1225 1435 IPR011989 -
Ssu4g1144 1442 Gene3D - 793 1017 IPR011989 -
Ssu4g1144 1442 ProSiteProfiles HEAT repeat profile. 83 121 IPR021133 -
Ssu4g1144 1442 Gene3D - 267 506 IPR011989 -
Ssu4g1144 1442 PANTHER CLASP 28 1434 - -
Ssu4g1144 1442 SUPERFAMILY ARM repeat 294 1432 IPR016024 -
Ssu4g1144 1442 Coils Coil 10 30 - -
Ssu4g1144 1442 ProSiteProfiles HEAT repeat profile. 160 198 IPR021133 -
Ssu4g1144 1442 Pfam HEAT repeat 160 187 IPR000357 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1144 Ssu-Chr4 18190888 18205430 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1144 K16578 - gmx:100796697 2610.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1144 4 18190888 18205430 Ssu4g1144 4 18190888 18205430 ECH
Ssu4g1144 4 18190888 18205430 Ssu7g2294 7 44988097 45001933 PCT