Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2261 ATGGCAACTTTGCACACTCTTGCATTGTCCTCTCCACTGTCCAACTCACTTCAGAAGCCACGCTCGTACTCAGTCGCATCTCCAATTGTCCATCAAAGTAGAAACTCCTCATTCAATGGTCAAACATTACGCCTGCCATGTTTGAGGTTACCTGTGCTAACACAAAATACTCCCATGCACATGCCTGCTATCATGATGGCCAAACCAGCAATACAGTTCATCCAGGGAACTGATGAACAAACAATACCTGATGTGAAGCTGACTAAATCAAGGGATGGAACAAATGGCATGGCAATCTTCACATTTGATCAACCCTCAGTTTTTGATTCTTCGGGTGAAATAGGTGATATCACTGGGTTTTACATGATTGATGAGGAAGGAGTCCTTCAGTCAGTTGATGTAAGtgctaaatttgtcaatgggaAGCCCTCAAAAATTGAAGCCAAGTATGTAATGCGGAGTCCACGGGAGTGGGATAGATTCATGAGATTCATGGAGCGATACTCGAATGCAAATGGTTTgcaattcataaaaaaatga 540 0.4056 MATLHTLALSSPLSNSLQKPRSYSVASPIVHQSRNSSFNGQTLRLPCLRLPVLTQNTPMHMPAIMMAKPAIQFIQGTDEQTIPDVKLTKSRDGTNGMAIFTFDQPSVFDSSGEIGDITGFYMIDEEGVLQSVDVSAKFVNGKPSKIEAKYVMRSPREWDRFMRFMERYSNANGLQFIKK 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2261 179 TIGRFAM PS_II_psb28: photosystem II reaction center protein Psb28 71 177 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Ssu7g2261 179 Pfam Psb28 protein 71 176 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Ssu7g2261 179 Gene3D Photosystem II Psb28 66 179 IPR038676 -
Ssu7g2261 179 PANTHER - 1 179 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Ssu7g2261 179 Hamap Photosystem II reaction center Psb28 protein [psb28]. 68 177 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2261 Ssu-Chr7 44553273 44554885 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2261 K08903 - gmx:100780777 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2261 7 44553273 44554885 Ssu7g2261 7 44553273 44554885 ECH
Ssu4g1177 4 18825681 18826040 Ssu7g2261 7 44553273 44554885 PCT