Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1177 ATGGCTGTTATCATGATGGTGAAACCAACCATACGGTTCATTCAAGGGACTGATGAACAGACAGTACCAGATGGGAGGCTGACTAAGTCACGTGATGGAACAAATGGTATGGCTATCTTCAAGTTTGATCAaccctctattttttattcttctggTGAAGTTGGTGACATCACCGGTTTATACATGATTGATAAGGAAGGGGTCCTTCAGTCTGTTGAGGAGAGTGCTAACTTTGTCAATGGAAAGCCCTCAGGAGTTGAAGCTAAGTATGTGATGCAGAGTCCACGGGAGTGGGATAGATTCATGAGATTCATGGAACGATATTCTAATGCAAATGGTTTGCAAttcataaaaagataa 360 0.3861 MAVIMMVKPTIRFIQGTDEQTVPDGRLTKSRDGTNGMAIFKFDQPSIFYSSGEVGDITGLYMIDKEGVLQSVEESANFVNGKPSGVEAKYVMQSPREWDRFMRFMERYSNANGLQFIKR 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1177 119 Hamap Photosystem II reaction center Psb28 protein [psb28]. 8 117 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Ssu4g1177 119 Gene3D Photosystem II Psb28 9 119 IPR038676 -
Ssu4g1177 119 PANTHER - 2 119 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Ssu4g1177 119 TIGRFAM PS_II_psb28: photosystem II reaction center protein Psb28 11 117 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
Ssu4g1177 119 Pfam Psb28 protein 11 116 IPR005610 GO:0009523|GO:0009654|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1177 Ssu-Chr4 18825681 18826040 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1177 K08903 - qsu:112012355 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1177 4 18825681 18826040 Ssu7g2261 7 44553273 44554885 PCT