Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2192 ATGTCGGGGGAAGTTTATGATGGACAAGATGCAGGCTATGTGCCTGAGAACCCTGAGTTTCCGCAAAACCATTCTGATGAACATGATGGAGGAAATGTGATCGATGACTTGGGGTTTCCGCAACTGCAGCCCGATGAACACAATGCAGGCAATTTGGCTGAGGATGCCGATCACCccgaaaataattttgatgggAATGATGTTGAAGGTTTGCCCGGAAACCCTGATTTTCCTCCGCAAGAGCATGCTGAGGAGCAGCATGGTGGAGGTGACATGACTGAGAATTTTGGCTCTGAGGAAAAACAGGGATCTGAGGAGGATTTGAAAAAAGGTGAAGTAAAGAAGTGGCCAGGGTGGCCTGGGGAGAATGTTTTTAGGATGTTGGTTCCTGTGCAAAAGGTTGGCAGTATTATTGGCCGTAAAGGCGAGTTTATTAGGAAAATTACTGAAGAGACTAAGGCTCGTATAAAAATTCTTGATGGTCCACCTGGAACTGCAGAAAGAGCTgTAATGGTTTCTGCGAAAGAAGAGCCAGATCGCAGCATACCGCCTGCTGTGGATGGTTTGTTAAGGGTTCATAAACAAGTTGTCAATGTGGACCCTAATCCTGCCGATAGTGCATCAGGTGCAGGACGCCCAGTTGTTACAAGGCTTCTAGTGGCAGATACTCAGGCAGGAAGCTTGATTGGGAAGCAGGGGTCCACTATAAAATCCTTTCAAGATGCCACAGGATGCAATATACGTGTTCTTGGTTCAGAACACCTGCCAGTTTTTGCTCTGCGAGATGATAGTGTTGTTGAAATACAAGGGGAATCTTCTGGGGTTCACAAGGCGGTTGAACTTATTGCAATTCATCTACGTAAATTCTTGGTTGACCGCAGCATAGTTGGAGTATTTGAAACCCAGATGCAAAGGCCAGATGTTCGAGCAAACCAGAGTGTGCCACTGGGGCCACCGCACCAACCTTGGGGTCCTCCTCAAGGTTTTCCAGCTCCTGGACCTGGCAGTGGTGGTGGACCTGCTTTTCCACCCAATCCTCAGTATATGCCGCCTTCACATAACTATGATAATTACTACCCACCTGCTGACCTGCCTCCCATGGACAAGCACCTTCATCAGGCTCCAGCACCTGCCTATGTAAGAGATGCTTCTATGGGAATTCATTCATCCAGTGCACAGCCGCAACAATCTGTTGTGACTAAGGTCACGCAGCACATGCAGATTCCTCTGTCCTATGCAGATGCTGTTATTGGAGCATCAGGGGCAAACATCAGCTACATCCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAGACCAGGGGTGTTCCAGGAGAGATGACTGTTGAGATAAGTGGTACTGCTTCACAAATACAGGCTGCCCAACAGCTAGTGCAGAATTTCATGGCTGAAGCTGCAAGTGCGACACAGGATCATATGGGGGGATCAATTAACCAAGGTTACAATTCCTATCCTACTACTGCTCCTGTCTATGCATCTCCGCCCTCAAGCGCTGGTGGTCATGCGGGCCATGTACCTTCAGCAGATTATGGTCCCGTTTATGGCACCAATTATGGTTATTGA 1584 0.4754 MSGEVYDGQDAGYVPENPEFPQNHSDEHDGGNVIDDLGFPQLQPDEHNAGNLAEDADHPENNFDGNDVEGLPGNPDFPPQEHAEEQHGGGDMTENFGSEEKQGSEEDLKKGEVKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIRKITEETKARIKILDGPPGTAERAVMVSAKEEPDRSIPPAVDGLLRVHKQVVNVDPNPADSASGAGRPVVTRLLVADTQAGSLIGKQGSTIKSFQDATGCNIRVLGSEHLPVFALRDDSVVEIQGESSGVHKAVELIAIHLRKFLVDRSIVGVFETQMQRPDVRANQSVPLGPPHQPWGPPQGFPAPGPGSGGGPAFPPNPQYMPPSHNYDNYYPPADLPPMDKHLHQAPAPAYVRDASMGIHSSSAQPQQSVVTKVTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEISGTASQIQAAQQLVQNFMAEAASATQDHMGGSINQGYNSYPTTAPVYASPPSSAGGHAGHVPSADYGPVYGTNYGY 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2192 527 MobiDBLite consensus disorder prediction 1 116 - -
Ssu7g2192 527 ProSiteProfiles Type-1 KH domain profile. 401 465 - -
Ssu7g2192 527 Coils Coil 458 478 - -
Ssu7g2192 527 CDD PCBP_like_KH 124 193 - -
Ssu7g2192 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 392 472 IPR036612 GO:0003723
Ssu7g2192 527 Gene3D K Homology domain, type 1 388 477 IPR036612 GO:0003723
Ssu7g2192 527 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 49 521 - -
Ssu7g2192 527 PANTHER POLY(RC)-BINDING-LIKE PROTEIN 49 521 - -
Ssu7g2192 527 CDD KH-I 403 466 - -
Ssu7g2192 527 MobiDBLite consensus disorder prediction 98 116 - -
Ssu7g2192 527 ProSiteProfiles Type-1 KH domain profile. 122 189 - -
Ssu7g2192 527 Pfam KH domain 403 466 IPR004088 GO:0003723
Ssu7g2192 527 Pfam KH domain 216 282 IPR004088 GO:0003723
Ssu7g2192 527 Pfam KH domain 125 177 IPR004088 GO:0003723
Ssu7g2192 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 114 177 IPR036612 GO:0003723
Ssu7g2192 527 CDD PCBP_like_KH 215 283 - -
Ssu7g2192 527 Gene3D - 122 291 - -
Ssu7g2192 527 ProSiteProfiles Type-1 KH domain profile. 213 282 - -
Ssu7g2192 527 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 204 295 IPR036612 GO:0003723
Ssu7g2192 527 MobiDBLite consensus disorder prediction 318 350 - -
Ssu7g2192 527 MobiDBLite consensus disorder prediction 308 371 - -
Ssu7g2192 527 SMART kh_6 121 194 IPR004087 GO:0003676
Ssu7g2192 527 SMART kh_6 212 287 IPR004087 GO:0003676
Ssu7g2192 527 SMART kh_6 400 470 IPR004087 GO:0003676
Ssu7g2192 527 MobiDBLite consensus disorder prediction 50 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2192 Ssu-Chr7 42998279 43003492 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2192 K21444 - gmx:100818363 909.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2192 7 42998279 43003492 Ssu7g2192 7 42998279 43003492 ECH
Ssu4g1255 4 20362580 20368971 Ssu7g2192 7 42998279 43003492 PCT