LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g1255	ATGGAAGAGATATTGTTGTGGAAGGGACTCAAAGTGGATCAACAATCAGAGCCTCTAACAATACTAAGATCAGAAAATATACCCGGGATGGCCCAGGACGGTTTTGATGGACATGATGTAGGATATGTACCTGAGGACCCTAATTTTCCTCAAAATCATTCTGATGAACATGATGTAGGGACTGTGATTGATAGCTCTGGATTTCCTCACCTGCTGCCTGATGAACACGGTGCAGGCAATTTGGTGGAGGATGCCAATTTTCCTGAAAATCATTTTGATGGACATGAACATGATGTTGGAGGTTTGCCTGGTGACGTGGATTTTCCACAGCAGGAGCGTGTTGAGGAAGGCCATGGTGCTGGAGATGTGACTGAGAATTTTGATTCTCTGCCGAAACAGGGATCTGAGATTGATTTGAAAGGAcgtgaaataaaaaagtggCCAGGGTGGCCTGGAGAGAATGTTTTCAGGATGTTGGTTCCGGTGCAGAAGGTTGGCAGTATTATTGGCCGAAAGGGCgagtttataaagaaaattacagAAGAGACTAAGGCGCGGATTAAAATTCTTGATGGTCCACCAGGAATCTCAGAAAGAGCAGTAATGGTTTCTGCAAAAGAAGAGCCAGATCGCCCCATACCACCTGCTGTTGATGGTTTGTTAAGGGTTCATAAGCAAGTTATCAATGTTGACCGTGACCTTGCGGATAGCACATTGGCTGCTGGACGTTCAGTTGTTACTAGGCTTCTAGTGGCAGATACTCAAGCAGGAAGCTTGATTGGGAAGCAGGGATCAACCATAAAATCCATTCAAGATGGATCTGGTTGCACTATACGCGTTCTTGGATCAGAAAACCTGCCAGTATTTGCTTTGCGAGATGATAGTGTTGTTGAAATACAAGGGGAATCTGCTGGTGTTCACAAGGCAGTTGAACTTATTGCTGTTCATTTACGCAAGTTTTTGGTTGACCGCAGCATAGTTGGAGTTTTTGAAACGCAGATGCAAATGCCAGATGTTAGAGTTAACCAGAATGTGCCAACACATCAAAATTGGGGTCCTCCTCCTCAAGGGTTTCCTGCTcctggtggtggtggaggacCTGCTTTTGCACCCAATCATCAATATATGCCACCTTCACATCACTATGATAGTTATTACCCACCTACTGAGTTGCCTCCTATGGACAAGCACCTTCATCAAGGTCCACCACCTGCCTATGCAAGGGATGCTTCTATGGGAATTCATTCATCAAGTGCACAACCGCAACAATCTGTTGTAACTAAGGTCACACAGCACATGCAAATTCCTCTTTCATATGCAGATGCTGTTATAGGAGCATCGGGCTCAAATATCAGCTATATTCGTCGTGCTAGTGGAGCAAGTATTACAATTCAGGAAACAAGGGGTGTGCCAGGGGAGATGACTGTTGAGATAAGTGGGACTTCTTCTCAAATACAGGCAGCCCAGCAGCTGGTTCAgAATTTCATGGCTGAAGCTGCAAGTGCGATACAGGATCCTATGGGGGGATCAGTTAGCCAAGGTTACAGTGCCTATCCAACTAATGCTCCAGTTTATGCATCTCCACCCTCTAGCACTGGTGGTCATACTGGTCACGTGCCTTCTGCAGATTATGGCCCCGTGTATGGTACCAATTATGGGTATTAA	1665	0.439	MEEILLWKGLKVDQQSEPLTILRSENIPGMAQDGFDGHDVGYVPEDPNFPQNHSDEHDVGTVIDSSGFPHLLPDEHGAGNLVEDANFPENHFDGHEHDVGGLPGDVDFPQQERVEEGHGAGDVTENFDSLPKQGSEIDLKGREIKKWPGWPGENVFRMLVPVQKVGSIIGRKGEFIKKITEETKARIKILDGPPGISERAVMVSAKEEPDRPIPPAVDGLLRVHKQVINVDRDLADSTLAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGSGCTIRVLGSENLPVFALRDDSVVEIQGESAGVHKAVELIAVHLRKFLVDRSIVGVFETQMQMPDVRVNQNVPTHQNWGPPPQGFPAPGGGGGPAFAPNHQYMPPSHHYDSYYPPTELPPMDKHLHQGPPPAYARDASMGIHSSSAQPQQSVVTKVTQHMQIPLSYADAVIGASGSNISYIRRASGASITIQETRGVPGEMTVEISGTSSQIQAAQQLVQNFMAEAASAIQDPMGGSVSQGYSAYPTNAPVYASPPSSTGGHTGHVPSADYGPVYGTNYGY	554

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g1255	554	CDD	PCBP_like_KH	155	224	-	-
	Ssu4g1255	554	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	148	207	IPR036612	GO:0003723
	Ssu4g1255	554	CDD	PCBP_like_KH	246	314	-	-
	Ssu4g1255	554	Gene3D	-	153	322	-	-
	Ssu4g1255	554	Gene3D	K Homology domain, type 1	415	503	IPR036612	GO:0003723
	Ssu4g1255	554	ProSiteProfiles	Type-1 KH domain profile.	244	313	-	-
	Ssu4g1255	554	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	241	327	IPR036612	GO:0003723
	Ssu4g1255	554	CDD	KH-I	430	493	-	-
	Ssu4g1255	554	SMART	kh_6	152	225	IPR004087	GO:0003676
	Ssu4g1255	554	SMART	kh_6	427	497	IPR004087	GO:0003676
	Ssu4g1255	554	SMART	kh_6	243	318	IPR004087	GO:0003676
	Ssu4g1255	554	PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	79	548	-	-
	Ssu4g1255	554	ProSiteProfiles	Type-1 KH domain profile.	428	492	-	-
	Ssu4g1255	554	Pfam	KH domain	156	208	IPR004088	GO:0003723
	Ssu4g1255	554	Pfam	KH domain	430	493	IPR004088	GO:0003723
	Ssu4g1255	554	Pfam	KH domain	247	313	IPR004088	GO:0003723
	Ssu4g1255	554	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	419	499	IPR036612	GO:0003723
	Ssu4g1255	554	ProSiteProfiles	Type-1 KH domain profile.	153	220	-	-
	Ssu4g1255	554	PANTHER	POLY(RC)-BINDING-LIKE PROTEIN	79	548	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g1255	Ssu-Chr4	20362580	20368971	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g1255	K21444		-	gmx:100799901	964.14

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu4g1255	4	20362580	20368971	Ssu7g2192	7	42998279	43003492	PCT