Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2190 ATGCAGAAAGAGTATAATGACAAGCCCACCTTCACACAGATCGTGGTGGCTTCCTCTATTGGGTTGATATTTGCCGCAGCAATGCATTATCGCGTTAAAAGAATGAGAGATCGAAAGATCATCCCACGTCTAAGGATGTCAAAGGCACACCAATTCCCAAAGCTTGAAAAGTTCTCTCATTACGTagCTAGGCAAATGGGGTTCAAAGACAGGAGAAGTTGTCCTCATCTTTGTAAATTGGCTTCTGAATACATAAGAAAATCCGAGGGATGTGAAGATGATCTCTACGCCTTCTTCGAGAACGAACCAGATGCGGATTCACTTTTTGTGAAGCTTGTCGAGGAGTTTGAGAGATGCATTCTTAGTTACTTTGCGTTCCATTGGAGCCATGGTGATGTTTTGATAAGTCAGGTGTTGAGCTCTGAAATTGAACCAAGAGCGAAGCTCAAGCACATAGTTATGGCGGCAACTAGGGAACAAAGGTTCGAGAGAGTAACCAAGAATCTGAAGGTGGCTAGAGTTTTTAACACATTAGTGGAAGAAATGAAAGCAATGGGACTTGTAACAAATGATGACTCTCGATGCACAGAGGTGATGGCTCCAGTAGCTCACAGTGATAGGAGCCCCGTGCTTCTTTTCATGGGTGGTGGCATGGGAGCTGGCAAGAGCACCGTGCTTAAGGACATTCTCAAAGAGCCTTTCTGGGCAGGAGCAGCAGGCAATGCCGTCATCATTGAGGCAGATGCCTTCAAAGAATCAGATGTCATCTATAAGGCCCTTAGTTCAAGAGGGCATCAGGACATGATTCGAACAGCTGAACTGGTACACCAATCGTCCACTGATGCAGCCTCATCCCTCCTGGTAACAGCACTAAATGAGGGGCGTGATGTAATTATGGATGGCACGCTCTCCTGGGTACCATTTGTTGTGCAGACAATAACAATGGCTAGAAATGTCCACCGCCGCCGTTACCGGATGGGAGCTGGCTACAAGGTGAATGAGGATGGAACTGTGACCGAAAACTATTGGGAACGAATTAAGGAGGAAGAACCTGAACAAGTTGGAGGCAAAAGGAGAAAACCATATAGGATAGAGTTGGTTGGAGTAGTATGTGATGCTTACCTCGCAGTCATTAGAGGCATAAGGAGAGCTATTATGTGTAGAAGAGCAGTAAGAGTGAAGTCACAATTGAAATCCCACAAGAGATTTGCGGATGCATTTCTGACTTATTGTCAGCTAGTAGACAATGCCCGGCTATACAGTACAAATTCTTTGGAAGGCCCACCTAAGATAAATGTTGTAAAGTTGATAGGATGGAAAGATAGAGACAAGACATTGCTCGTTGATCCATATGAAATAGATTGTTTGAAGAGGGTTGCTAGGTTGAATGAAGATGCCAACTCCATATATGAACTTTACAAGCACCCAAGCCCAACTTGTGAAGCTGGATCCATATGGAAAGACATTGTACTGTCTCCTTCAAGGTTGAACATCCAACAAGAGCTGAAGTATTCAATCCAAAAGGTTGAGAGATTAAAATGCTAG 1545 0.4421 MQKEYNDKPTFTQIVVASSIGLIFAAAMHYRVKRMRDRKIIPRLRMSKAHQFPKLEKFSHYVARQMGFKDRRSCPHLCKLASEYIRKSEGCEDDLYAFFENEPDADSLFVKLVEEFERCILSYFAFHWSHGDVLISQVLSSEIEPRAKLKHIVMAATREQRFERVTKNLKVARVFNTLVEEMKAMGLVTNDDSRCTEVMAPVAHSDRSPVLLFMGGGMGAGKSTVLKDILKEPFWAGAAGNAVIIEADAFKESDVIYKALSSRGHQDMIRTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRRRYRMGAGYKVNEDGTVTENYWERIKEEEPEQVGGKRRKPYRIELVGVVCDAYLAVIRGIRRAIMCRRAVRVKSQLKSHKRFADAFLTYCQLVDNARLYSTNSLEGPPKINVVKLIGWKDRDKTLLVDPYEIDCLKRVARLNEDANSIYELYKHPSPTCEAGSIWKDIVLSPSRLNIQQELKYSIQKVERLKC 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2190 514 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 340 IPR027417 -
Ssu7g2190 514 PANTHER UNCHARACTERIZED 2 513 IPR044802 -
Ssu7g2190 514 Gene3D - 192 428 IPR027417 -
Ssu7g2190 514 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 2 513 - -
Ssu7g2190 514 Pfam Zeta toxin 203 315 IPR010488 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2190 Ssu-Chr7 42919568 42925928 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2190 - - pvu:PHAVU_007G178200g 922.154
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1257 4 20421950 20425856 Ssu7g2190 7 42919568 42925928 PCT