Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1257 ATGATTTTTTCCCCTCACATAGCTCAATCTTGTTCAGATTATGATGCCAAACCCAGTTTTACACAGATTATCGTAGCCTCTTTTATTGGGTTGATGTTTGTCGTGGTCTTCCATTATCGTCTGAAATATATTAGAGATCGAAAGATCATCCCACGTATAAGATTATCACGCGCAGGCCACGTCCCAAAGCTTGAAAGGTTCTCCCATTACGTAgCTAGGCAAATGGGGTTCAAAGACAGGAGATATTGTCCTCATCTATGTAGATTGGCTTCTGAATACATAAGGAAATACGAGGGATTTGAAGATGATATATACGCCTTCTTTGAGAACGAACCAGATGCCGATTCACTTTATGTGAAGCTGGTAGAGGAGTTTGAGAGATGCATTCTTAGTTACTTTGGATTCCATTGGAACTATGGTGATCTAATTATGAGTCAGGTGTTGAGCTCGGAAAATGATCCAAAAAAGAAGCTCAAGCACATAGTTATGGCAGCAACTAGGGAACAGAGGTTCGAGAGACTTGCCAAGAATCTAAAGGTGGCTAGAGtttttaatacattagtagAAGAGATGAAAGCAATGGGAATTGCTGCATCTGATGACTCTCAATGTACAGAGGTGATGGCGCCAGTAGCTCATAGTGATAGGAGCCCAGTGCTTCTCCTAATGGGGGGAGGTATGGGAGCTGGCAAGAGCACCGTGCTCAAGGATATTCTCAAAGAACCTTTCTGGGCAGGAGCAGCCGGAAATGCCGTAGTCATTGAGGCAGATGCCTTCAAAGAATCAGATGTCATCTACAAGGCCCTTAGCTCCGGAGGTCACCATGACATGATTCAAACAGCAGAACTGGTGCACCAATCATCCACAGATGCAGCCTCATCCCTCCTAGTAACAGCATTAAATGAGGGACGAGATGTTATTATGGATGGCACACTCTCCTGGGTGCCATTTGTTGTGCAGACAATAACAATGGCCAGGAATGTTCACCGTCGCCGTTACCGCATGGGAGTTGGCTACAGGGTGAACGAGAATGGAAAGGTAACTGAAAACTATTGGGAAAGAATTGAAGACGAAGAACCTGAACAAGTTGGAGGTAAAAAGAGAAAACCATATAGGATAGAGCTGGTTGGAGTAGTGTGTGATGCTTATCTTGCAGTCGTCAGAGGCATAAGGTCGAGAGCTATTATGTGCAGAAGAGCAGTGAGAGTAAAGTCACAATTGAAATCCCACAAGAGATTTGCTGAGGGATTTATGACTTACTGTCAACTAGTGGATAATGCACGGCTATACTTCACAAACGCATTGGAAGGCCCAGCCAAGTTGATAGGATGGAAAGATAGAGACAAGACACTGCTTGTTGATCCAGATGAATTCGACTGTTTGAAGAGGCTTGCCAAGTTGAATGAAGATGCCAATTCCATTTATGAACTCTACAAGCACCCCAACCCAGCTTGTGAAGCTGGATCGGTATGGAAAGACATTGTATTATCCCCTTCAAGGTTGAACATCCAACAGGAGCTCAAGTATTcaatccaaaaaattgaaagcttGAAATAG 1557 0.429 MIFSPHIAQSCSDYDAKPSFTQIIVASFIGLMFVVVFHYRLKYIRDRKIIPRIRLSRAGHVPKLERFSHYVARQMGFKDRRYCPHLCRLASEYIRKYEGFEDDIYAFFENEPDADSLYVKLVEEFERCILSYFGFHWNYGDLIMSQVLSSENDPKKKLKHIVMAATREQRFERLAKNLKVARVFNTLVEEMKAMGIAASDDSQCTEVMAPVAHSDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGAAGNAVVIEADAFKESDVIYKALSSGGHHDMIQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRRRYRMGVGYRVNENGKVTENYWERIEDEEPEQVGGKKRKPYRIELVGVVCDAYLAVVRGIRSRAIMCRRAVRVKSQLKSHKRFAEGFMTYCQLVDNARLYFTNALEGPAKLIGWKDRDKTLLVDPDEFDCLKRLAKLNEDANSIYELYKHPNPACEAGSVWKDIVLSPSRLNIQQELKYSIQKIESLK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1257 518 Pfam Zeta toxin 212 325 IPR010488 GO:0005524|GO:0016301
Ssu4g1257 518 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 12 518 - -
Ssu4g1257 518 PANTHER UNCHARACTERIZED 12 518 IPR044802 -
Ssu4g1257 518 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 331 IPR027417 -
Ssu4g1257 518 Gene3D - 200 440 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1257 Ssu-Chr4 20421950 20425856 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1257 - - gmx:100794775 934.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1257 4 20421950 20425856 Ssu7g2190 7 42919568 42925928 PCT