Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2180 ATGAACCAAATTCGTCGCTACCAGAGGATTCTCATCCTCTCTCTGCTCTTTCTCTCCGTCGTTGCTCCTCTCGTCTTCGTCTCTCACTGGCTCAACCTTCTCACTCCCCTCGGGAGAAGAGAGTTTCTCGAAGATTTATATCGCGCTACATACAGGACAGATACTTTGAAGTTAAATGCTGTAGAACAGGAAGGTGCTGAAGAATTAGAAGAGCCAAATCAAGTTGTTTATACGGAAAAAGATTTTGTTTCAACAAATAGTTATGATTCAGAAAAGAATAAAGATTATAAGGAATCTGGAATTGCAGGTTACAGAGGTAACACTTTGGACAGAAATGTTTCAGGATTCAACCAAGATAAAAGACAACACCAGGGAGCTCAGCAGAAAGAATTATCCTTCATGGCTCAAAGTAGGAATATACATGATTCACATGGAATGTCAGAGACAAATATTGAAGTGACAAATAAGAAGGTTCAAGAGATTAAGGATCAAATTATTTTAGCCAAAGCATACTTGAAAATTGCACCACCAAGCAACAATTTACGCTTGAGGGAGTTGGAGCAGCTAACGAGGGAGATGGAATTGGCAGTTGGAGACACCACCCAGGATTCAGATCTGTCAACGAGTGCTTTGCAGAAAATGAGACACATGGAGGCTTCACTGTCTAAAGTCTACCGTGCTTTCCCGGACTGCTCTGCTATGGCTGCTAAGCTCCGTACAATGAAGCGTCAGGCTGAAGAGCAAGTACGTTCTCAGCAACATCAAGCAACATATCTTGTAAATCTTGCTGCAAGGACTGCCCCTAAAGGCCTTCACTGTCTTTCTATGCAGCTGACTGCAGAATACTTTGCCTTGAGTCCTGAGGAGAGAAAGCTtccaaatgaaaataaaattcatcatcCAGACCTTTATCATTATGCTGTCTTCTCTGATAATGTTCTGGCATGTGCAGCGGTTGTTAACTCTACTATCTGTACTGCCAAGGAACAGGAGAAACTTGTTTTTCATGTAGTGACCAAATCACTCAACTTACCAGCCATCTCAATGTGGTTCTTAATAAATCCTCCTGGCAAAGCTACAATCCACATACAGAGCATAGACAACTTTGAATGGTTGTCCAAGTACAATGCCTACCAGGAAAATAATTCCAGCGATCTAAAATACACTTCTGAATTGAACTACCTGCGTTTCTACTTGCCAGACATTTTTCCTGCTCTAAATAAGATTGTGCTCTTTGATCATGATGTGGTGGTGCAACAAGACCTCGGTGAACTATGGAATACCAATATGAAGGGAAATGTAATTGGAGCAGTTGGAACTTGTCAGGAAGGAAAAATCCCATTTCATAGGATTGATATGTTCATAAACTTCTCAGATCCATTAATTGGAAAGAGGTTTGATGTCAATGCTTGCACATGGGCATTTGGGATGAACTTGTTTGATTTGCAACAGTGGAGGAGACATAATTTAACTGCTGTCTATCACAAATATTTGCAAATGGGTTTGTGGAACGTTGGAAGTCTACCTTTAGGCTGGCTCACTTTCTATAACAAGACAGAATTTTTGGATAGACAATGGCATGTTCTTGGCCTTGGTTATAGTTCGGGTGTCGATCGAAATGAGATTGAGCGGGCTGCCGTTATACACTATGATGGGATTAGGAAGCCGTGGCTGGATATTGCAATGGGCAGATATAAAAGTTATTGGaccaaatttttgaattttgacaaCCCGTTTTTGCAACAGTGCAATATCCAGGCATAG 1764 0.4042 MNQIRRYQRILILSLLFLSVVAPLVFVSHWLNLLTPLGRREFLEDLYRATYRTDTLKLNAVEQEGAEELEEPNQVVYTEKDFVSTNSYDSEKNKDYKESGIAGYRGNTLDRNVSGFNQDKRQHQGAQQKELSFMAQSRNIHDSHGMSETNIEVTNKKVQEIKDQIILAKAYLKIAPPSNNLRLRELEQLTREMELAVGDTTQDSDLSTSALQKMRHMEASLSKVYRAFPDCSAMAAKLRTMKRQAEEQVRSQQHQATYLVNLAARTAPKGLHCLSMQLTAEYFALSPEERKLPNENKIHHPDLYHYAVFSDNVLACAAVVNSTICTAKEQEKLVFHVVTKSLNLPAISMWFLINPPGKATIHIQSIDNFEWLSKYNAYQENNSSDLKYTSELNYLRFYLPDIFPALNKIVLFDHDVVVQQDLGELWNTNMKGNVIGAVGTCQEGKIPFHRIDMFINFSDPLIGKRFDVNACTWAFGMNLFDLQQWRRHNLTAVYHKYLQMGLWNVGSLPLGWLTFYNKTEFLDRQWHVLGLGYSSGVDRNEIERAAVIHYDGIRKPWLDIAMGRYKSYWTKFLNFDNPFLQQCNIQA 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2180 587 Coils Coil 235 255 - -
Ssu7g2180 587 Pfam Glycosyl transferase family 8 273 561 IPR002495 GO:0016757
Ssu7g2180 587 SUPERFAMILY Nucleotide-diphospho-sugar transferases 304 585 IPR029044 -
Ssu7g2180 587 PANTHER HEXOSYLTRANSFERASE 1 586 - -
Ssu7g2180 587 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 1 586 IPR029993 GO:0047262
Ssu7g2180 587 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 306 578 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2180 Ssu-Chr7 42788962 42793839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2180 1 587 Glycosyltransferase AT1G06780 48.203 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2180 K13648 - gmx:100819255 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2180 7 42788962 42793839 Ssu7g2180 7 42788962 42793839 ECH
Ssu4g1264 4 20596243 20602356 Ssu7g2180 7 42788962 42793839 PCT