Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1264 ATGAAGCAATCGCGTCGGTGGCAGAGGACTCTGTTCCTCACTCTGCTCTCTCTCTCCGTCGTTGCTCCTCTCGTTTTCGTCTCCCACAGGCTTAAAACTCTCACTCCCGACGGACGACGAGAGTTTCTTGATGATTTATCGAGTGTTACATATAGGACAGATCCTTTAAGGCTAAATGCTATTGAACAGGAAGGCGCTGAAGAATTAGAAGAGCCAAAGCAAGttgtttataaagaaaaagattttggtTCGACAAATAGTTACATTTCGCAAAAGATTAATGATTCTGAGGAATCTAAAATTGAGGGGTACAAAAATAACCTTTTGGAAAGAAATGTTTCAGAATTCGACCATGACAAAAGACAAGACCAGGAAGCTCAGCAGAAAGGATTGTTCTCCATGGATGGGGATGAGaatatatttaatacaacaGTTGCACACAATCAGAATATACACACTCAGTCTCAAAGAATGACAGATGAGAATGTTGAATTAACAGATAAGCAATCTGGTCCAAAAGCAAACCAACATCATCACAGCTCGCGTCCTCAATCTCGGAGAGTGACAAATCAGAAGGTTTTGGAGATTAAGGATCAAATTATTAGAGCCAGAGCATACTTGGGCTTTGCTCCACCAGGCAGCAACTCGCACTTGGTGAAGGAGTTAAAGCTGAGAATTAAAGAGATGGAACGTGCTGTTGGAGAAGCTACTAAGGATTCACATCTGTCAAGGAGTGCTTTGCAGAAAATGAGACACATGGAGGCTTCACTGTCTAAAGCCAACCGTGCTTTCCCAGACTGCACTGCTATGGCTGCTAACCTCCGTGCAATGAATCATAATGCTGAAGAGCAAGTTCGTTCTCAGCAACACCAAGCAACATATCTTGTTCATCTTGCTGCAAGGACCACCCCAAAAGGTCTTCACTGTCTTTCTATGCAGCTAACTGCTGATTACTTTACCCTGAAACCTGAGGACCGGATGCTTCCAAATGAAAAGAAGATTCATGATCCAAAACTATATCATTATGCTGTCTTCTCTGACAATGTTCTGGCATGTGCAGTGGTTCTTAACTCCACTGTTTCTAAGGCCAAgAAACAGGAGAAACTTGTTTTCCATGTAGTGACCAATTCACTCAACTTTCCTGCAATCCGGATGTGGTTCTTATTAAACCCTCCTGGCAAAGCCACAGTCCACATACAAAGCATAGAGAACTTTGAATGGTTGCCCAAGTACGATGCATTCAAGAAAGATAATTCCAGTGATCCAAGATATACTTCTGAGCTGAACTACCTGCGTTTCTACCTGCCAGATATTTTCCCTAGTTTAAATAAGATTCTGCTCTTTGATCATGATGTGGTGGTGCAACAAGATCTCAGTGGACTATGGAATGCCAATATGAAAGGAAAAGTAATTGCAGCAGTTGGCACTTGTCAGAAAGGTGAAACTTCATTTCATAGGATGGATATGTTCATAAACTTCTCAGATCCATTCATTACAAAGAGGTTTGATGTCAATGCTTGCACGTGGGCATTTGGGATGAACTTGTTTGATTTACAACAGTGGAGGAGACATAATTTAACTGCTCTCTATCACAGATATTTGCAAATGGGTTCCAAGAGGCCATTGTGGAACATTGGAAGTCTGCCCTTAGGCTGGCTCACCTTCTATAACAAGACTATGGTTTTGGACAGACGGTGGCACATTCTTGGCCTTGGTTATGACTCAGGTGTCGATAGAAATGAGATTGAGCGGGCTGCCGTTATACACTACGATGGAATTAGGAAACCGTGGTTGGACATTGCAGTGGGAAGATATAGAAGTTATTGGATCAAATTTATGAAGTTTGACCACCCTATTTTGCAACGTTGCAATCTCCAGGCGTAg 1884 0.4161 MKQSRRWQRTLFLTLLSLSVVAPLVFVSHRLKTLTPDGRREFLDDLSSVTYRTDPLRLNAIEQEGAEELEEPKQVVYKEKDFGSTNSYISQKINDSEESKIEGYKNNLLERNVSEFDHDKRQDQEAQQKGLFSMDGDENIFNTTVAHNQNIHTQSQRMTDENVELTDKQSGPKANQHHHSSRPQSRRVTNQKVLEIKDQIIRARAYLGFAPPGSNSHLVKELKLRIKEMERAVGEATKDSHLSRSALQKMRHMEASLSKANRAFPDCTAMAANLRAMNHNAEEQVRSQQHQATYLVHLAARTTPKGLHCLSMQLTADYFTLKPEDRMLPNEKKIHDPKLYHYAVFSDNVLACAVVLNSTVSKAKKQEKLVFHVVTNSLNFPAIRMWFLLNPPGKATVHIQSIENFEWLPKYDAFKKDNSSDPRYTSELNYLRFYLPDIFPSLNKILLFDHDVVVQQDLSGLWNANMKGKVIAAVGTCQKGETSFHRMDMFINFSDPFITKRFDVNACTWAFGMNLFDLQQWRRHNLTALYHRYLQMGSKRPLWNIGSLPLGWLTFYNKTMVLDRRWHILGLGYDSGVDRNEIERAAVIHYDGIRKPWLDIAVGRYRSYWIKFMKFDHPILQRCNLQA 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1264 627 Pfam Glycosyl transferase family 8 309 601 IPR002495 GO:0016757
Ssu4g1264 627 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 1 626 IPR029993 GO:0047262
Ssu4g1264 627 Coils Coil 271 291 - -
Ssu4g1264 627 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 342 618 IPR029044 -
Ssu4g1264 627 SUPERFAMILY Nucleotide-diphospho-sugar transferases 340 624 IPR029044 -
Ssu4g1264 627 Coils Coil 219 239 - -
Ssu4g1264 627 MobiDBLite consensus disorder prediction 152 191 - -
Ssu4g1264 627 PANTHER HEXOSYLTRANSFERASE 1 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1264 Ssu-Chr4 20596243 20602356 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1264 1 627 Glycosyltransferase AT1G06780 51.011 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1264 K13648 - gmx:100793193 1087.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1264 4 20596243 20602356 Ssu7g2180 7 42788962 42793839 PCT