Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2175 ATGGCCTCTTCACTCTCAAACATGCTCATTATTCCCTTTTCCAAAACGTACGAACCTAGCTTCCGATCAACCCACCCCAAATTCCTAACAGCACCACCACCTCTCGCGCGAACCCAAACGCCAATAAGGCTCGCTGCACGCGACAACTCCTCAACCTCCATCCTGCGagaacaagaacaagaacaagaGCACGAAGAAGCAACAACGCATCACAGGGAGAGAAACAACTACAACTACAACTACAACTACAACTACAAGCCCAAGTTAGAGGAACAGCTGGCGCGACTCCCGGAGGCGTGGCGCGAAATCCAGGGCGAGAGCGACTGGGCCGGGCTTCTGGAGCCCATGGACCCTCTTCTGCGGATGGAGGTGATCCGCTACGGCGAGCTGGCCCAGGCCTGCTACGACGCCTTCGACTTCGACCCCTTCTCCAAGTACTGCGGCAGCTGCAGGTTCACGCGCCGCGACTTCTTCTCCTCCCTCGACATGTCCCACCACGGCTACACCGTCACGCGCTACCTCTACGCCACCGCCAACATCAACCTCCCCAACTTCTTCAAGCACTCGCGCTGGTCCAAGATGTGGAGCAAGCACGCCAACTGGGCGGGATACGTCGCCGTTTCGGACGACGCCACGAGCCACCGCCTGGGGAGGAGAGACATAGCCATCGCGTGGCGCGGGACGGTCACGCGCCTCGAGTGGGTGGCGGACCTCATGGATTTCCTCAAGCCAATCTCATCCAACGGCGTCCCCTGTCCGGATCAGACGGTCAAGGTTGAATCGGGTTTTTTAGAGCTTTACACGGACAAAGAGGAGAGTTGCGGTTATTGCAAGTACTCCGCGAGGGAACAGGTTTTGTCGGAGGTGAAGAGGTTGTTGGAGATGCATGGCGACGAGGAGGTGAGCATCACGATAACGGGGCACAGCTTGGGGAGCGCGTTGGCGATTTTGAGCGCTTACGATATTGCGGAAACGGGGGCGAACGTCGTGGGGGCTAGGTAA 1002 0.5719 MASSLSNMLIIPFSKTYEPSFRSTHPKFLTAPPPLARTQTPIRLAARDNSSTSILREQEQEQEHEEATTHHRERNNYNYNYNYNYKPKLEEQLARLPEAWREIQGESDWAGLLEPMDPLLRMEVIRYGELAQACYDAFDFDPFSKYCGSCRFTRRDFFSSLDMSHHGYTVTRYLYATANINLPNFFKHSRWSKMWSKHANWAGYVAVSDDATSHRLGRRDIAIAWRGTVTRLEWVADLMDFLKPISSNGVPCPDQTVKVESGFLELYTDKEESCGYCKYSAREQVLSEVKRLLEMHGDEEVSITITGHSLGSALAILSAYDIAETGANVVGAR 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2175 333 Pfam Lipase (class 3) 223 327 IPR002921 GO:0006629
Ssu7g2175 333 SUPERFAMILY alpha/beta-Hydrolases 127 330 IPR029058 -
Ssu7g2175 333 Gene3D alpha/beta hydrolase 99 333 IPR029058 -
Ssu7g2175 333 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 40 330 - -
Ssu7g2175 333 PANTHER PHOSPHOLIPASE A1-IGAMMA2, CHLOROPLASTIC 40 330 - -
Ssu7g2175 333 CDD Lipase_3 163 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2175 Ssu-Chr7 42767221 42768222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2175 13 328 Acyl Lipid Metabolism Gene Families AT1G06800 61.180 3.29e-133 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2175 - - gmx:100779676 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2175 7 42767221 42768222 Ssu7g2175 7 42767221 42768222 ECH
Ssu4g1266 4 20625246 20630181 Ssu7g2175 7 42767221 42768222 PCT