Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1266 ATGGCTACATCAATCTCAAACATACTCGTCGCCTTGCCCAAAACCCAGCAAGGCTGCACCTTCCGTTCCGATCAACCCAAACTATCCCTATCGCAAAACGTTCTAACCCTAACCCCAAAGAAACCCAATCCCACGTTTACGTGCAAGGCCACCCTGTCCTCCACCCTCGAGACCAGTCATCAGCAAGAAGAACAGAAACAAAAGGCCATAGCAGACGCGTGGCGCAAGATCCACGGCGAAGACGACTGGGCCGGGCTTCTCGACCCGATGGATCCTCTAATGCGGGCCGAGCTGACCCGCTACGGCGAGATGGCCCAGTCCTGCTACGACGCCTTTGACTTCGACCCGTACTCCAAGTACTGCGGCAGCTGCAGGTACCCCCTCGAAGAATTCTTCGAGTCCCTGGACTTGACCCACATGGGTTACACCACGACGCGCTACCTCTACGCCACCGCGAACATCAACCTCCCCAACTTTTTCCGCAAGTCGCGGTGGCCCGACACGATGTGGAGCAGGCACGCCAACTGGGCCGGCTACATCGCCGTCTCGGACGACGCCACGAGCAAGCGGTTGGGGCGGAGGGACATCACCGTCGCGTGGCGAGGGACCGTCACGCACGTGGAGTGGGTCGCGGACCTCATGAATTTCCTCAAACCGATCTCCCCCGACGTACCCTGCGCCGACAAGGGCGTCAAGGTGGAGGCCGGTTTCTTGGATCTGTACACCGACAGGGAGACAACCTGCGGGTACTGCAAGTACTCCGCGAGGGAGCAGGTTCTCGCGGAGGTGAAGCGGCTGATGGAGATGTACGGTGACGAGGAGGTCAGTGTTACGATAACGGGACACAGTCTCGGGAGTGCGATGGCTGTATTGAGCGCGTTTGACATTGTGGAAACGGGGGTGAGTGTTGGGAAGGGTGGGCGTAGAGCGCATGTTTCGGTGTTTTCGTTTTCGGGGCCTAGGGTGGGGAACGTGAGGTTCAAGGAGCGGTTGGAGAAGAAGCTGGGGATTAAGGTGCTGAGGGTGCATAATACTCACGACATGGTGCCGCAGTCGCCGGGGTTTTTCTTCAACGAGGATTCTCCGCAGTGGGTGCTGAAGCTGGCACAGGGGTTGCCGTGGTGTTACTTGCACGTTGGGGTGGAGTTGGAGTTGGACCATAAGAAATCGCCTTATCTGAATCCCAAAGGGGATGCTGCTTGCGCACATAACTTGGAGGCTCACTTGCACTTGCTCGACGGATACCATGGGAGGAATCGTGCATTTGAGCGAACGACTGGTAGGGACCTTGCTTTGGTGAACAAGGACTGCGACTTTTTGAAAGATGAGCATTCGGTGCCACCACGCTGGAGACAAGACTTGAATAAGAATATGGTCAAGACTGAAGGACTGCTGGGTGCTGGCTGA 1407 0.5714 MATSISNILVALPKTQQGCTFRSDQPKLSLSQNVLTLTPKKPNPTFTCKATLSSTLETSHQQEEQKQKAIADAWRKIHGEDDWAGLLDPMDPLMRAELTRYGEMAQSCYDAFDFDPYSKYCGSCRYPLEEFFESLDLTHMGYTTTRYLYATANINLPNFFRKSRWPDTMWSRHANWAGYIAVSDDATSKRLGRRDITVAWRGTVTHVEWVADLMNFLKPISPDVPCADKGVKVEAGFLDLYTDRETTCGYCKYSAREQVLAEVKRLMEMYGDEEVSVTITGHSLGSAMAVLSAFDIVETGVSVGKGGRRAHVSVFSFSGPRVGNVRFKERLEKKLGIKVLRVHNTHDMVPQSPGFFFNEDSPQWVLKLAQGLPWCYLHVGVELELDHKKSPYLNPKGDAACAHNLEAHLHLLDGYHGRNRAFERTTGRDLALVNKDCDFLKDEHSVPPRWRQDLNKNMVKTEGLLGAG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1266 468 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 1 462 - -
Ssu4g1266 468 Gene3D alpha/beta hydrolase 73 463 IPR029058 -
Ssu4g1266 468 Pfam Lipase (class 3) 198 355 IPR002921 GO:0006629
Ssu4g1266 468 CDD Lipase_3 147 387 - -
Ssu4g1266 468 SUPERFAMILY alpha/beta-Hydrolases 157 415 IPR029058 -
Ssu4g1266 468 PANTHER PHOSPHOLIPASE A1 1 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1266 Ssu-Chr4 20625246 20630181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1266 62 463 Acyl Lipid Metabolism Gene Families AT2G30550 60.294 0.0 535
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1266 - - gmx:100815007 789.645
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1266 4 20625246 20630181 Ssu7g2175 7 42767221 42768222 PCT