Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2163 ATGGATGCAAAATTTGTTGCACAGTGCAGGGTTTCAACACTTACTTTAGCTCATTGGAAACCAAAACACCCTTCTGTGGTTGGTGTGCTCGCAAGGCCATCCGATAGCATTTcaggagaaaaaagaataacCAATGTGTACAAAGATAGCTTGTTTGATCACATAGCCATAAACTATTTATCAAAATGCGTTCAAGAGGCAACAGGACTCAGAAACAGCAAGAGTGGGTATGAGAGTCTAGTGGAGGCAGCTACCACGGCTTCACAGAGGTTTAGTCCTATTCAACAGCATCAAGTTGTCATTCAAGCACTTGACAGAGCATTCCCGAAGCCAATGCTTTTATTGATAAGGATACTGCTACCACCATCCAAATTCACAAGAAAATTGTTTGCCGTCTTCACCACGTTGCTCTTTGCTTGGTTAGTCGGGCCATCTGAGGTGAGAGAATCGGAGGTCGAcgggagaagagaaaaaaatgtagtCCACATAAAAAAATGCAGGTTCTTAGAAGAGACAAATTGTGTAGGAATGTGTATCAATCTTTGCAAAATCCCATCTCAATCGTTTATAAAGCATTCTCTGGGCACGTCAGTCAACATGGTCCCTAATTTTGATGACATGAGTTGTGAGATGATATTTGGCCAGGATCCCCCAGAATCAACTGATGATCCAGCACTCAAGCAACCGTGTTTTAAACTATGCAAGGCAAAAAAAAGCCATGGAATGAATTGCCTCGTTGATGCAGCAGGCTTTCAGGTCAGCAAGGAAGGAACAAGAGTGCCCCACCTTTGGTATGGTGACAAAGCTGAGACTCATCACCCATCGTTTTTATCTCATCAGGATAACAGCTAA 852 0.4108 MDAKFVAQCRVSTLTLAHWKPKHPSVVGVLARPSDSISGEKRITNVYKDSLFDHIAINYLSKCVQEATGLRNSKSGYESLVEAATTASQRFSPIQQHQVVIQALDRAFPKPMLLLIRILLPPSKFTRKLFAVFTTLLFAWLVGPSEVRESEVDGRREKNVVHIKKCRFLEETNCVGMCINLCKIPSQSFIKHSLGTSVNMVPNFDDMSCEMIFGQDPPESTDDPALKQPCFKLCKAKKSHGMNCLVDAAGFQVSKEGTRVPHLWYGDKAETHHPSFLSHQDNS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2163 283 Pfam Beta-carotene isomerase D27-like, C-terminal 140 220 IPR025114 GO:0005506
Ssu7g2163 283 PANTHER BETA-CAROTENE ISOMERASE D27, CHLOROPLASTIC 20 242 - -
Ssu7g2163 283 PANTHER BETA-CAROTENE ISOMERASE D27 20 242 IPR038938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2163 Ssu-Chr7 42488230 42497999 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2163 K17911 - gmx:100782912 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1278 4 20812342 20818710 Ssu7g2163 7 42488230 42497999 PCT