Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1278 ATGGATGCAAATTGTTTTAGGCTGAACAAGAGTTCAGCACTATGTTCAACTCACTTGAACCCGATCAAACGTAAACCAGAACATCCTTGTGTGATTGCAATGCTCAGAAGGCCCTCAGATGACATAACAGGAGAACCAAGAAAAACTAATGCCTACAACGATAACTTGTTTGATCGCTTAGCAATAAACCATCTATCAAAAAGCGTTCAAGCAGCCACAGGACTCGGTAACAATAAGAGTGGGTATGAGAGCTTGGTTGAGGCAGCTACGGTGGCTAAACAGAAATTTGACCCTGTTCAGCAGCAAGAGGTTATCATTCAAGCTCTTCACAGAGCCTTCCCAAAGCCAATACTTTCATTCATAAAGACACTGCTACCACCATCCAAACTCTCAAGGGAATATTTTGCCGCTTTCACCACTTTGTTCTTTGCTTGGTTAGTCGGGCCCTCCGAGGTGAGGGAATCGGAGGTCAACGGGCGAAGGGAAAAAAATGTAGTCTACATCACAAAATGCAGGTTTTTGGAGGAAACAAATTGTGTAGGGATGTGTATAAATCTCTGCAAAATGCCATCTCAATCGTTTATGAAGGACTCTCTGGGGATGCCAGTCAACATGGTCCCCAATTTTGATGACATGAGTTGTGAGATGATATTTGGACAGGATCCTCCGGCATCAACTGATGATCCAGCACTGAAGCAACCATGCTATAAACTATGTCAGCATGGATGGAACAAGAGTGTCTCCCACATTCCGTATGCTGCCAAAGCTCATACTCATCAGCCATAG 786 0.4402 MDANCFRLNKSSALCSTHLNPIKRKPEHPCVIAMLRRPSDDITGEPRKTNAYNDNLFDRLAINHLSKSVQAATGLGNNKSGYESLVEAATVAKQKFDPVQQQEVIIQALHRAFPKPILSFIKTLLPPSKLSREYFAAFTTLFFAWLVGPSEVRESEVNGRREKNVVYITKCRFLEETNCVGMCINLCKMPSQSFMKDSLGMPVNMVPNFDDMSCEMIFGQDPPASTDDPALKQPCYKLCQHGWNKSVSHIPYAAKAHTHQP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1278 261 Pfam Beta-carotene isomerase D27-like, C-terminal 145 225 IPR025114 GO:0005506
Ssu4g1278 261 PANTHER BETA-CAROTENE ISOMERASE D27 24 246 IPR038938 -
Ssu4g1278 261 PANTHER BETA-CAROTENE ISOMERASE D27, CHLOROPLASTIC 24 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1278 Ssu-Chr4 20812342 20818710 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1278 K17911 - gmx:100813404 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1278 4 20812342 20818710 Ssu7g2163 7 42488230 42497999 PCT