Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2130 ATGAGAGATGAGAACTCGAAGAAAAGCAAGCTTTCATGGCCCAAAACGTTGGTCAAGAAGTGGTTCAATATTAAGAGCAAAGCCGAGGACTTTCAGGCAGATGATGTCCTCTACGCAGgtGTCAATCAAGAGTGGAGGAGCAACTGTTCACAGAGGGAGGAATGCACTGTCAAAAAAAGCAAAACAGAGAGAGCAAAGAGAAGGCACTCAGATAGAACGCGGCGAGGTAAGATTGACCCTGATGCGGCTCAGGTTACAGATGTGTATAACTATAGAATCTTTGCTGCCACTTGGAATGTAGCTGGAAAATCTCCTCCAAGTTATTTGAGTCTGGAAGATTGGCTTCACTCTTCTCCTCCTGCTGATATCTATGTTCTTGGGTTTCAAGAAATTGTGCCTCTCAATGCTGGTAATGTTTTGGGCACAGAAGACAATGGCCCTGCCAGAAAGTGGCTAGCTCTTATTAGGAAGACCCTAAACAGTCTTCCTGGAACAAGTGGTGAATGCCACACTACTTCACCGCTTCCTGACCCTATTGTAGAGTTAGATGCTGATTTTGAGGGATCAATGAGGCAGAAGGCAACCTCTTTCTTTCATCGCAGGTCATTCCAATCTTTGAGTCATAGTATGAGGATGGACAATGACATGTCACTACCACAAGCATGCCTTGATCGCCGTCTCAGCGTCTGTGATAGAATGATGTTTGGTCACAGGACAAGTGACTATGACCCCAATTATAGATGGGCTTCCTCGGACGATGAAAATGGCCCTAGTGACTCCCCAGTTATAACACAATATTCACCAATGTCATATAGAGGTTGCTTCTCTGTGGAGGATAGAGATAGACAGACAGGGCACTCAAGATACTGTTTGGTTGCTAGTAAGCAAATGGTTGGGATATTTCTAACAGTTTGGGTGAAAAGTGATGTAAGAGATGATGTTCACAACATGAAAGTGTCTTGTGTTGGCAGAGGATTGATGGGATATCTTGGAAACAAGGGTTCAATATCAATTAGCATGTCTTTGCACCAAACAAGCTTTTGCTTCATCTGTAGTCATTTGACTTCTGGACAAAAGGAAGGTGATGAGCTAAGGAGAAATTCAGACGTAATGGAGATTCTCAGAAAGACGAGGTTTCCCCGGGTTCATGGCATGGGTGATGAGAGTTCTCCTCAGACAATCCTGGAACATGATCGAATAATTTGGCTGGGGGATTTAAATTATCGGATAGCCCTTTCTTACCGTGCAGCAAAAGCTCTTGTTGAGATGCATAATTGGAAGGTTCTGTTAGAGAATGACCAGCTACATATAGAGCAGAGACAAGGTCGAGTCTTTGAAGGATGGAATGAGGGGAACATATATTTCCCTCCCACATACAAGTACTCAAACAATTCGGACAGATATGCGGGTGATGAAAGACACTCAAAACAAAAGAGGAGAACTCCAGCATGGTGTGATCGTATCTTGTGGTATGGAACAGGCCTCCACCAATTATCTTATGTTCGTGGGGAGTCAAGATTCTCGGATCATAGACCAGTTTACAGCATGTTTCTGGCAGAAGTTGAGTCTGTTAGCCGTAACCGAATAAAAAAATGCTCTAGTTGCTCCAGTTCAAGGATTGAAGTAGAAGAGTTGTTGCCTCATTCACATGGTTACAGTTATACTGATTTGAATTTCTTTTGA 1683 0.4332 MRDENSKKSKLSWPKTLVKKWFNIKSKAEDFQADDVLYAGVNQEWRSNCSQREECTVKKSKTERAKRRHSDRTRRGKIDPDAAQVTDVYNYRIFAATWNVAGKSPPSYLSLEDWLHSSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRKTLNSLPGTSGECHTTSPLPDPIVELDADFEGSMRQKATSFFHRRSFQSLSHSMRMDNDMSLPQACLDRRLSVCDRMMFGHRTSDYDPNYRWASSDDENGPSDSPVITQYSPMSYRGCFSVEDRDRQTGHSRYCLVASKQMVGIFLTVWVKSDVRDDVHNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKEGDELRRNSDVMEILRKTRFPRVHGMGDESSPQTILEHDRIIWLGDLNYRIALSYRAAKALVEMHNWKVLLENDQLHIEQRQGRVFEGWNEGNIYFPPTYKYSNNSDRYAGDERHSKQKRRTPAWCDRILWYGTGLHQLSYVRGESRFSDHRPVYSMFLAEVESVSRNRIKKCSSCSSSRIEVEELLPHSHGYSYTDLNFF 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2130 560 Gene3D Endonuclease/exonuclease/phosphatase 228 545 IPR036691 -
Ssu7g2130 560 Gene3D Endonuclease/exonuclease/phosphatase 70 208 IPR036691 -
Ssu7g2130 560 SUPERFAMILY DNase I-like 78 534 IPR036691 -
Ssu7g2130 560 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 3 559 IPR045849 GO:0004445|GO:0046855
Ssu7g2130 560 Pfam Endonuclease/Exonuclease/phosphatase family 96 510 IPR005135 GO:0003824
Ssu7g2130 560 SMART i5p_5 225 525 IPR000300 GO:0016791|GO:0046856
Ssu7g2130 560 PANTHER PHOSPHORIC MONOESTER HYDROLASE-RELATED 3 559 - -
Ssu7g2130 560 MobiDBLite consensus disorder prediction 60 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2130 Ssu-Chr7 42007466 42010454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2130 292 527 Acyl Lipid Metabolism Gene Families AT2G43900 28.727 6.14e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2130 - - gmx:100797409 1090.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2130 7 42007466 42010454 Ssu7g2130 7 42007466 42010454 ECH
Ssu4g1295 4 21224270 21227224 Ssu7g2130 7 42007466 42010454 PCT