Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1295 ATGAGAGATGAGAACTCGAAGAAGAGCAAGctttcaTGGCCAAAAACGTTGGTCAAGAAGTGGTTCAATATCAAGAGCAAAACTGAGGATTTTCAGGCAGATGATGTTCTCTGCGAAGGTGTTGATGAAGAGTGTAGGAGCAACTACTCAGAGAGGGAGGCGTGCACCATCAAGAAAAGCAAATCAGAGAGATCAAGCAGATGGTACTCAGACAGAATGCGAAGAGGTAAGAGTGACATTGATGAAGCTCAGGTTACAGATGTGTATAATTATAGAATCTTTGTTGCCACTTGGAATGTAGCAGGGAAGTCACCTCCGAGTTATTTGAGTCTTGAAGATTGGCTTCACACATCTCCACCTGCTGATATCTATGTTCTTGGGTTTCAAGAAATTGTACCTCTTAATGCTGGTAATGTTTTGGGAACAGAAGACAATGGTCCTGCAAGAAAATGGCTAGCCCTTATTAGGAGGACCCTGAACAGCCTTCCTGGAACAAGTGGTGGATGCCACACTCCTTCACCTCTCCCTGATCCTATTGTAGAGCTAGATGCTGATTTTGAGGGATTAACGAGGCAAAAGGCAACCTCCTTCTTTCAACGGAGGTCCTTCCAATCCTTGAGTCGTAGTATGAGAATGGATAACGATATGCTAATGCCACAAGCTTGCCTTGATCGCCGTCTCAGTGTCTGTGATAGAATGATATTTGGTCACAGACCCAGTGACTATGACCCCAATTATCGATGGGGTTCCTCGGATGAAGAAAATGGTGCTGGTGACTCCCCAATTACAACACAATATTCACCAATGTCATATGGCGGTTGTTTCACCATGGAGGACAGTGATAGACAGACAGGACACTCAAGGTACTGTTTGGTTGCTAGTAAGCAAATGGTTGGGGTATTTCTAACTGTTTGGGTGAAAAGTGATATCAGAGATGATGTTCACAACATGAAAGTGTCTTGTGTTGGCCGAGGGTTGATGGGATATCTTGGAAACAAGGGATCAATATCAATTAGTATGTCATTGCACCAAACGAGCTTTTGCTTCATTTGTAGTCATTTGACTTCTGGACAAAAGGATGGCGATGAGTTAAGGAGAAATTCAGATGTAATGGAGATTCTAAGAAAGACAAGGTTTCCCCAGGTCCATGACATGGGTGATGAGAATTCTCCTCAGACAATTCTGGAACATGATCGAATAATATGGCTGGGGGATTTAAATTATCGGATAGCCCTTTCTTACCGTGCAGCAAAAGCCCTTGTTGAGATGCATGATTGGAAGACTTTGTTAGAAAATGACCAGCTATGTATAGAGCAGAGGCAAGGTCGAGTCTTTGAAGGATGGAATGAAGGGAAAATATATTTCCCTCCcacatataaatattcaaacaattcaGACAGATATGCAGGTGATGACAGACGctcaaaacaaaagagaagaaCTCCAGCATGGTGTGATCGTATCTTGTGGTATGGAAGTGGGCTTCACCAATTGTCATATGTTCGTGGGGAGTCAAGATTCTCAGATCATAGGCCAGTTTATAGCATATTCTTGGCAGAGGTTGGGTCTATTAGCTGTaaccaaataaagaaaagcTCCAGTTCCAGGATTGAAGTAGAAGAGTTGTTCCCACATTCACATGGTTATGGCTACACTGGTTTGAACTACTTTTGA 1674 0.4164 MRDENSKKSKLSWPKTLVKKWFNIKSKTEDFQADDVLCEGVDEECRSNYSEREACTIKKSKSERSSRWYSDRMRRGKSDIDEAQVTDVYNYRIFVATWNVAGKSPPSYLSLEDWLHTSPPADIYVLGFQEIVPLNAGNVLGTEDNGPARKWLALIRRTLNSLPGTSGGCHTPSPLPDPIVELDADFEGLTRQKATSFFQRRSFQSLSRSMRMDNDMLMPQACLDRRLSVCDRMIFGHRPSDYDPNYRWGSSDEENGAGDSPITTQYSPMSYGGCFTMEDSDRQTGHSRYCLVASKQMVGVFLTVWVKSDIRDDVHNMKVSCVGRGLMGYLGNKGSISISMSLHQTSFCFICSHLTSGQKDGDELRRNSDVMEILRKTRFPQVHDMGDENSPQTILEHDRIIWLGDLNYRIALSYRAAKALVEMHDWKTLLENDQLCIEQRQGRVFEGWNEGKIYFPPTYKYSNNSDRYAGDDRRSKQKRRTPAWCDRILWYGSGLHQLSYVRGESRFSDHRPVYSIFLAEVGSISCNQIKKSSSSRIEVEELFPHSHGYGYTGLNYF 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1295 557 Pfam Endonuclease/Exonuclease/phosphatase family 96 510 IPR005135 GO:0003824
Ssu4g1295 557 Gene3D Endonuclease/exonuclease/phosphatase 69 194 IPR036691 -
Ssu4g1295 557 Gene3D Endonuclease/exonuclease/phosphatase 258 542 IPR036691 -
Ssu4g1295 557 SMART i5p_5 225 525 IPR000300 GO:0016791|GO:0046856
Ssu4g1295 557 PANTHER PHOSPHORIC MONOESTER HYDROLASE-RELATED 3 556 - -
Ssu4g1295 557 SUPERFAMILY DNase I-like 80 530 IPR036691 -
Ssu4g1295 557 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 3 556 IPR045849 GO:0004445|GO:0046855
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1295 Ssu-Chr4 21224270 21227224 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1295 292 490 Acyl Lipid Metabolism Gene Families AT2G43900 31.390 4.99e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1295 - - gmx:100803074 1057.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1295 4 21224270 21227224 Ssu4g1295 4 21224270 21227224 ECH
Ssu4g1295 4 21224270 21227224 Ssu7g2130 7 42007466 42010454 PCT