Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2126 ATGGCTTTTACTAGAGGGTTTGTGTTGTGTCTAGTTGCGGTCCTGGTGGCCACTATGTGGACTCAAAATGCAGCCCAATCAGGTTGCACCAGTGCACTCACTAGCTTGACCCCTTGTCTGAGCTACATAATGGGAAGTTCATCAACCCCATCAGCTTCATGTTGCTCACAGCTCTCAAGCGTAGTTCAATCTTCACCACAGTGCCTTTGCTCCGTGCTTAATGGTGGGGGTTCCACTTTTGGAATTACCATAAATCAAACTCTTGCTCTGTCTCTCCCTGGCGCTTGTAAGGTGCAAACTCCCCCAGTTAGCCAGTGCCGAGCTGGCAATGGACCAACATCTCCTTCGATTGCTCCAGTTGGTTCTCCATCCGGTTTTCCAGCTGAATCACCTCAAGACTCAATTACGCCTTCTGCTTCAGACTTTCCCTCAGTTGCAGGGGGAGGATCTAAAACTGTGCCAACAACAGACGGTGGTTCATCTGATGGTACCGCAATTAAAGTCCCCTCCCACTTGGTGCTCTATCTTCTTGCCATTGTGTCTTGCGTGTTAACCTTCACCAAGTTCTGA 570 0.493 MAFTRGFVLCLVAVLVATMWTQNAAQSGCTSALTSLTPCLSYIMGSSSTPSASCCSQLSSVVQSSPQCLCSVLNGGGSTFGITINQTLALSLPGACKVQTPPVSQCRAGNGPTSPSIAPVGSPSGFPAESPQDSITPSASDFPSVAGGGSKTVPTTDGGSSDGTAIKVPSHLVLYLLAIVSCVLTFTKF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2126 189 PRINTS Plant phospholipid transfer protein signature 28 44 IPR000528 GO:0006869|GO:0008289
Ssu7g2126 189 PRINTS Plant phospholipid transfer protein signature 49 63 IPR000528 GO:0006869|GO:0008289
Ssu7g2126 189 PRINTS Plant phospholipid transfer protein signature 83 100 IPR000528 GO:0006869|GO:0008289
Ssu7g2126 189 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 28 107 IPR036312 -
Ssu7g2126 189 MobiDBLite consensus disorder prediction 127 161 - -
Ssu7g2126 189 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 7 184 IPR043325 -
Ssu7g2126 189 MobiDBLite consensus disorder prediction 108 161 - -
Ssu7g2126 189 CDD AAI_LTSS 36 98 - -
Ssu7g2126 189 Gene3D - 26 104 IPR036312 -
Ssu7g2126 189 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 7 184 - -
Ssu7g2126 189 Pfam Probable lipid transfer 13 106 IPR016140 -
Ssu7g2126 189 SMART aai_6 29 106 IPR016140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2126 Ssu-Chr7 41932316 41933344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2126 1 180 Acyl Lipid Metabolism Gene Families AT2G48130 45.902 2.21e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2126 - - gmx:100306151 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2126 7 41932316 41933344 Ssu7g2126 7 41932316 41933344 ECH
Ssu7g2126 7 41932316 41933344 Ssu4g1298 4 21247810 21248979 PCT