Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1298 ATGGCGCCTAGAAGGATTGAGATGCTGCTGAGCATGTCCCTTGTGGTGGCTCTTTGGGGAGCCACATTGGCTCAATCCCAATCAAGTTGCACCAATGTGTTCATAAGTCTTTCTCCCTGCCTTGACTATGTAACAGGAAATGTATCTACCCCATCTTCTTCTTGCTGCTCTCAACTTGCCTTTGTGGTGAGGTCACAGCCACTGTGCCTATGTGAGGTTGTTAACGGTGGTGCTTCATCTATTGCTGCCAGTTTTAACATCAATCAGACTCGGGCCTTGGCACTCCCCACTGCTTGCAACGTTCAGACACCTCCCATTAGCACCTGCAGTGGCTCAGCTTCTTCCTCATCAGGTGTTTCTATTTCCAACTTTCCGAATTCCCCTTCAGGGATTGGATCTAATACTGTTTCATCAACGACTGGAGGCAGTAGAAGTGTCGGTGGCTTATCTCATGGAAATTCAAGTTCCACTAAATTGCCGTGTTCTTTGCTTGTCATGTTTGTCCTTGCAACGACTTTGACTTTCACCTTCAGGACCACGACCTAG 546 0.478 MAPRRIEMLLSMSLVVALWGATLAQSQSSCTNVFISLSPCLDYVTGNVSTPSSSCCSQLAFVVRSQPLCLCEVVNGGASSIAASFNINQTRALALPTACNVQTPPISTCSGSASSSSGVSISNFPNSPSGIGSNTVSSTTGGSRSVGGLSHGNSSSTKLPCSLLVMFVLATTLTFTFRTTT 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1298 181 PRINTS Plant phospholipid transfer protein signature 50 64 IPR000528 GO:0006869|GO:0008289
Ssu4g1298 181 PRINTS Plant phospholipid transfer protein signature 29 45 IPR000528 GO:0006869|GO:0008289
Ssu4g1298 181 PRINTS Plant phospholipid transfer protein signature 86 103 IPR000528 GO:0006869|GO:0008289
Ssu4g1298 181 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN-RELATED 5 179 IPR043325 -
Ssu4g1298 181 CDD AAI_LTSS 37 101 - -
Ssu4g1298 181 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 29 111 IPR036312 -
Ssu4g1298 181 Gene3D - 27 107 IPR036312 -
Ssu4g1298 181 SMART aai_6 30 109 IPR016140 -
Ssu4g1298 181 MobiDBLite consensus disorder prediction 132 156 - -
Ssu4g1298 181 Pfam Probable lipid transfer 12 109 IPR016140 -
Ssu4g1298 181 PANTHER LIPID TRANSFER PROTEIN 5 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1298 Ssu-Chr4 21247810 21248979 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1298 5 167 Lipid Metabolism Gene Families AT3G22600 44.311 7.55e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1298 - - gmx:100801492 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1298 4 21247810 21248979 Ssu4g1298 4 21247810 21248979 ECH
Ssu7g2126 7 41932316 41933344 Ssu4g1298 4 21247810 21248979 PCT