Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2101 ATGCAAATACCAGGGCACCCCAGTTACTACACCCCCAATAATGGCATTCTTCTGCAGTACAgtcaaGTGCCTGTCCAAAAACTCCCAGCTGGGGCCGCACCGCACTGCACTGCACTGCACTGCGTTCCCATACGAACACCTCTGAACTTTCTCGTCTGTTTCTTGCTTTCGTGCTTTGCTGCAATGGTAGGCCCCTCCAGCGCCGGCGGTCGTAGGGGAGTTAGAATCGCCGTCGTGGGGGACGGAGGCGCCGGAAAATCCACACTCATAGCCGCAATGGCATCGGAGTCTTTCCCCGAGTCCGTTCCGCCCGTGCTTCCCCCCACTCACTTGCCCCATAATCTCTACCCCGATTCCGTTCCTCTCACCCTCATTGACACACCTTCCAGCTTGGCAAAACAAGGCACGCGCAATGAAGAATTGAAGCGAGCTGATGCGGTGGTTTTAACCTATGCTTGCGATGAACCGGTGAGCTTTGAGCGTGTGAGTACTTACTGGCTCCCTGAACTGCAGAAGTTGGAGGTGAAGGCACCTGTGATTGTGGTTGGTTGCAAGCTTGACCTAAGGGATGAAAACCAGCTAGTGAGCTTAGAGAGTCTCACCACACATATCATGCAACGGTTCACTGAAATTGTCACCTGTGTTGAATGCTCTGCGGCTAAACTTTATCAGgtccctgaagttttttattttgccCAAAAAGCAGTACTGCATCCAGTAGGTCCTTTGTTTGATTATAAAAGACATGCTTTAACAGATCGATGCGTGAGGGCATTAAGAAGAATATTTGTTCTTTGTGATCACGACATGGATGGTGCCCTCAATGATGAAGAACTAAATGAGTTTCAGGTTAGATGCTTCAATGCACCATTGCAGCCATCTGAAATAGCAAAAGTCAAAACAATTGTAGAGCAGAAAGTACCTGAAGGAGTCAACTCTATTGGTCTTACCTTTCCAGGCTTTATTCATATCCATAATATGTTTCTAAAGAAAGGGCGAACAGAGACATTGTGGGCTGTTCTAAGAAAGTTTGGATATGATAATGATTTAAAACTCCGGGATGATTTCCTTCCAGTTCTATCTAAGCACGCTTCTGAGCAGAGTGTGGAGTTGACAGGTGAAGCTGTAGAGTTTCTCAATGGTATCTTTCGATTTTTAGATACGGATAAAGATCGATCCCTACTACCTGCTGAAGTTGATAAGCTATTTGATACTGCTCCAGAAAGTCCATGGAATGATGCTCCATATAAGGATGCAGCAGAGAAAACTGATATGGGCTATATCTCTCTGAATGGTTTTCTGTCTCAGTGGGCCCTTATGACATTACTTGATCCAACACGTAGCTTGGCTAACTTGATTTACATTGGATATAATGGTAATCCTGCTGCAGCACTCCATGTCACTCGTAGAAGATCAGTAGATCGCAAGAAGCAAACAACAGAAAGAAATGTGTTCCAATgctatgtttttggttctaaaCATTCTGGGAAATCTGCTTTGCTGTATTCATTGTTAGGAAGGcctttctcaaataattatactCCAACAACAGTTGAGCAGTATGCAGCAAATGCCATTGAACTAAAAGGGGTGAGGGTAACTAGGAAATTTCTCATATTGCGCGAGATACCTGAGGATGGATTATCGGAATTTTTGTCAAATCAGGATTTTTTGGCTGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAATATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGTTAGACAAGGAGAACTAACTGGTTATAGATTTCCTTGCCTCCTTATTGCTGCTAAGGATGATTTAATTCCATTCCCAAGGGCAGTACTAGATTCAGTTAAGgTTACTCAGGAATTGGGAATAGAGGCACCTATTCACGTCAGTATGAAGTTAGGTGATTCAAGTAAtgtgtataataaaattgttaatgcTGCAGAGCACCCTCATTTGAGCATTCCAGAAACTGAGATTGCACGGAAAAAGAAGCAACACCACCAGCTTCTTCATCACTCTCTTATTTTTGCCTTAGTTGGGGCTGCTATGGCAGTTGCCGGTTTGACAGCTTGTCGTGTGCGTGCAGTGAAGAAGAATTCTACTGCTTAG 2121 0.4286 MQIPGHPSYYTPNNGILLQYSQVPVQKLPAGAAPHCTALHCVPIRTPLNFLVCFLLSCFAAMVGPSSAGGRRGVRIAVVGDGGAGKSTLIAAMASESFPESVPPVLPPTHLPHNLYPDSVPLTLIDTPSSLAKQGTRNEELKRADAVVLTYACDEPVSFERVSTYWLPELQKLEVKAPVIVVGCKLDLRDENQLVSLESLTTHIMQRFTEIVTCVECSAAKLYQVPEVFYFAQKAVLHPVGPLFDYKRHALTDRCVRALRRIFVLCDHDMDGALNDEELNEFQVRCFNAPLQPSEIAKVKTIVEQKVPEGVNSIGLTFPGFIHIHNMFLKKGRTETLWAVLRKFGYDNDLKLRDDFLPVLSKHASEQSVELTGEAVEFLNGIFRFLDTDKDRSLLPAEVDKLFDTAPESPWNDAPYKDAAEKTDMGYISLNGFLSQWALMTLLDPTRSLANLIYIGYNGNPAAALHVTRRRSVDRKKQTTERNVFQCYVFGSKHSGKSALLYSLLGRPFSNNYTPTTVEQYAANAIELKGVRVTRKFLILREIPEDGLSEFLSNQDFLAACDVAVFVYDSSDEYSWKKSRDLLEKVVRQGELTGYRFPCLLIAAKDDLIPFPRAVLDSVKVTQELGIEAPIHVSMKLGDSSNVYNKIVNAAEHPHLSIPETEIARKKKQHHQLLHHSLIFALVGAAMAVAGLTACRVRAVKKNSTA 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2101 706 PRINTS Transforming protein P21 ras signature 74 95 - -
Ssu7g2101 706 PRINTS Transforming protein P21 ras signature 175 188 - -
Ssu7g2101 706 PRINTS Transforming protein P21 ras signature 214 236 - -
Ssu7g2101 706 SMART rho_sub_3 76 239 IPR001806 GO:0003924|GO:0005525
Ssu7g2101 706 ProSitePatterns EF-hand calcium-binding domain. 267 279 IPR018247 -
Ssu7g2101 706 CDD Miro2 481 662 - -
Ssu7g2101 706 Pfam EF hand associated 290 373 IPR013567 -
Ssu7g2101 706 Gene3D - 549 651 IPR027417 -
Ssu7g2101 706 Pfam EF hand associated 411 478 IPR013566 -
Ssu7g2101 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 658 IPR027417 -
Ssu7g2101 706 SMART ras_sub_4 71 239 - -
Ssu7g2101 706 ProSiteProfiles Miro domain profile. 482 653 IPR020860 GO:0003924|GO:0005525
Ssu7g2101 706 Gene3D - 352 544 - -
Ssu7g2101 706 PANTHER RHO FAMILY GTPASE 40 551 IPR003578 GO:0005525|GO:0007264
Ssu7g2101 706 Gene3D - 246 350 - -
Ssu7g2101 706 SUPERFAMILY EF-hand 242 438 IPR011992 -
Ssu7g2101 706 PANTHER MITOCHONDRIAL RHO GTPASE 40 551 - -
Ssu7g2101 706 SMART rab_sub_5 74 239 - -
Ssu7g2101 706 Gene3D - 71 241 IPR027417 -
Ssu7g2101 706 ProSiteProfiles Miro domain profile. 71 238 IPR020860 GO:0003924|GO:0005525
Ssu7g2101 706 PIRSF Miro 70 706 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Ssu7g2101 706 Pfam Ras family 489 610 IPR001806 GO:0003924|GO:0005525
Ssu7g2101 706 Pfam Ras family 76 236 IPR001806 GO:0003924|GO:0005525
Ssu7g2101 706 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 73 271 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2101 Ssu-Chr7 41529266 41547145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2101 64 704 EF-hand Containing Proteins AT3G63150 57.878 0.0 789
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2101 K07870 - gmx:100806983 1140.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1324 4 21868066 21877338 Ssu7g2101 7 41529266 41547145 PCT