Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1324 ATGAACAGTGAACCTTCGATTATTGATGCTTTATTATTTCCCGTTCTTATTCTGCTACCTGGCATCGCATCAATGGCAAATCACTCAAGCTTCGCCAGTCGCAGTGGAGTTCGAGTGGTCGTTGCCGGCGACCGAGCCACCGGAAAATCAAGCCTGATAGCTACCATAGCGTCGGAGTCATTCGCCGAGGCCGTTCCGCCGGTTCTTCCGCCCACTCTCTTGCCCCCTGATTTGTACCCCGACAACGTTCCTCTCACCATCATAGACACACCTTCCAGCTTGGAGAAACAAAGCAAGCGTAACGAGGAATTGAAAGGAGCTGATGTCGTGGTTTTAACCTATGCTTGCAATGACACCGCGTCCTTTTCGCGGTTGAGTTCTTACTGGTTCAGGGAACTGCAGAAGTTGGAGGTGAAGGCACCTGTGATTGTGGTTGGTTGCAAGCTAGATCTGAGAGATGAAAGCCAGCAAGTGAGCTTGGAGCGCCTCATGACACAGCTCCTGCAACAGTTCAAGGAAATTGTCACCTGCATTGAATGCTCTGCTGCTACACAATACCAGgtccctgaagttttttattttgctcaaaAAGCGGTACTGCATCCGGTTGATCCATTGTATGATCATGAGAGTCAAGCTTTAACGGATCGATGTGGTAGGGCATTGAGAAGaatatttgttctttttgaccGTGACATGGATGATGCCCTCAATGATGCAGAACTAAATGACTTTCAGGTTAGATGTTTCAATGCACCATTGCAATCATCTGAAATAGCAGGAGTCAAAACAGTTGTACAGCAGAAAGTACCTGAAGGAGTCAACTCACTTGGTCTTACTTTTCCAGGATTTATTTATGTCCATAATATGTTCCTAAAAAAAGGGCGTGCAGAGACATTATGGGCCGTTCTAAGAAACTTTggatatgataataatttgaaaCTCAAAGATGATTTCCTTCCTGTTCCATCTAAGCATGCTTTGGATCAGAGTGTGGAGCTGACAGGTGAAGCTGTAGAGTTTCTAAATGGTATCTTTCGACTGTTAGATACAGATAAAGATCGAGCCCTACGACCTGCTGAAGTTGATAAGTTATTTTGTACTGCTCCAGAAAGTCCATGGAATGATGCTCCATATAAGGATGCTACTGAGAGAACTGACGTGGGTTACATATCTCTTAATGGATTCCTGTCGCAGTGGGCCCTTATGACATTACTTGATCCACCATGTAGCCTGGCTAATTTGATTTACATTGGATATAGTGGTAATCCTGCTGCAGCTCTCCGTGTTACTTGTAGAAGAGCAGTAGATCGCAAGAAGCAAGCAACAGAAAGGAATGTGTTCCAATgctatgtttttggttctaaaAATGCCGGGAAGTCTGCTCTGTTGGATTCATTATTGGGAAGGCCTTTCTCAAACAATTATACTCCAACAACAGTTGAGAGGTTTGCAGCAAATGCCATTGAATTAATAGGGGGAACCAGAAAAACTCTTGTGTTGCGGGAGATACCAGAGAGTGAAATATCGAACATTTTGTTGAATCAGGATTGTTTGGCAGCATGTGATGTAGCTGTTTTTGTGTATGACAGCTCAGATGAACATTCATGGAAGAAATCCAGAGATTTGCTTGAGAAGGTTGCTAGACAAGGGGATGTAACTGGTTATAGAGTTCCTTGTCTCCTTATTGCTGCTAAGGATGATTTAACTCCGTATCCAAGGGCAGTACAAGATTCAGTTAAGGTTACTCAGGAATTGGGAATAGAGGCACCTATTCATGTAAGTATGAAATTAGGCGATTCCAGTAACGTGTACAATAAGATTGTCAATGCTGCAGAGCACCCTCATTTAAGCATTCCAGAAACTGAGATTGGGAGGAAAAGAAAGCAATACCATCGGCTTCTTCAGCACTCTCTTGTTTTTGCCTCAGTTGGGACTGCTATGGCAGTTGTTGGTTTGGCAGCATGTCGTGCATATGCTgtgaagaagaattcttctggTTAG 2004 0.4207 MNSEPSIIDALLFPVLILLPGIASMANHSSFASRSGVRVVVAGDRATGKSSLIATIASESFAEAVPPVLPPTLLPPDLYPDNVPLTIIDTPSSLEKQSKRNEELKGADVVVLTYACNDTASFSRLSSYWFRELQKLEVKAPVIVVGCKLDLRDESQQVSLERLMTQLLQQFKEIVTCIECSAATQYQVPEVFYFAQKAVLHPVDPLYDHESQALTDRCGRALRRIFVLFDRDMDDALNDAELNDFQVRCFNAPLQSSEIAGVKTVVQQKVPEGVNSLGLTFPGFIYVHNMFLKKGRAETLWAVLRNFGYDNNLKLKDDFLPVPSKHALDQSVELTGEAVEFLNGIFRLLDTDKDRALRPAEVDKLFCTAPESPWNDAPYKDATERTDVGYISLNGFLSQWALMTLLDPPCSLANLIYIGYSGNPAAALRVTCRRAVDRKKQATERNVFQCYVFGSKNAGKSALLDSLLGRPFSNNYTPTTVERFAANAIELIGGTRKTLVLREIPESEISNILLNQDCLAACDVAVFVYDSSDEHSWKKSRDLLEKVARQGDVTGYRVPCLLIAAKDDLTPYPRAVQDSVKVTQELGIEAPIHVSMKLGDSSNVYNKIVNAAEHPHLSIPETEIGRKRKQYHRLLQHSLVFASVGTAMAVVGLAACRAYAVKKNSSG 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1324 667 SMART ras_sub_4 38 202 - -
Ssu4g1324 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 233 IPR027417 -
Ssu4g1324 667 Pfam Ras family 452 577 IPR001806 GO:0003924|GO:0005525
Ssu4g1324 667 Pfam Ras family 38 199 IPR001806 GO:0003924|GO:0005525
Ssu4g1324 667 ProSitePatterns EF-hand calcium-binding domain. 230 242 IPR018247 -
Ssu4g1324 667 SUPERFAMILY EF-hand 205 401 IPR011992 -
Ssu4g1324 667 Pfam EF hand associated 253 336 IPR013567 -
Ssu4g1324 667 ProSiteProfiles Miro domain profile. 34 201 IPR020860 GO:0003924|GO:0005525
Ssu4g1324 667 PANTHER RHO FAMILY GTPASE 19 517 IPR003578 GO:0005525|GO:0007264
Ssu4g1324 667 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 619 IPR027417 -
Ssu4g1324 667 Gene3D - 30 204 IPR027417 -
Ssu4g1324 667 Gene3D - 315 505 - -
Ssu4g1324 667 ProSiteProfiles Miro domain profile. 445 614 IPR020860 GO:0003924|GO:0005525
Ssu4g1324 667 CDD Miro2 444 623 - -
Ssu4g1324 667 Gene3D - 513 612 IPR027417 -
Ssu4g1324 667 PRINTS Transforming protein P21 ras signature 177 199 - -
Ssu4g1324 667 PRINTS Transforming protein P21 ras signature 37 58 - -
Ssu4g1324 667 PRINTS Transforming protein P21 ras signature 138 151 - -
Ssu4g1324 667 PIRSF Miro 33 667 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0007005|GO:0031307
Ssu4g1324 667 Pfam EF hand associated 374 441 IPR013566 -
Ssu4g1324 667 PANTHER MITOCHONDRIAL RHO GTPASE 19 517 - -
Ssu4g1324 667 SMART rab_sub_5 37 202 - -
Ssu4g1324 667 ProSiteProfiles small GTPase Rab1 family profile. 25 249 - -
Ssu4g1324 667 SMART rho_sub_3 39 202 IPR001806 GO:0003924|GO:0005525
Ssu4g1324 667 Gene3D - 209 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1324 Ssu-Chr4 21868066 21877338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1324 25 665 EF-hand Containing Proteins AT3G63150 58.502 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1324 K07870 - gmx:100803790 1169.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1324 4 21868066 21877338 Ssu7g2101 7 41529266 41547145 PCT