Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2080 ATGATTTCAACAGAGAATAAATCACCTATCCAAGTGGGTAAGCAGTTAACCAAGATACAACGGCATGAAACTGGCAAGGATGTTCCCCTAGGTGCTATAGATCAAGTTGGTGAAGAGTTTAGTGATCATATGGTTTGTCAGGCAGCTAAAGTAGATTTAGAAATTCAGTCACATGGACAAATTTCTCCAATTCTTGATTCAAAAAGTTGCGATGTTGGAAGCAATCAAGATTCACAAGATCCATCATTACCACCAAATGATGAAGATAACATTAGAACTGTGAATCATTCAAATACAGCATCTGATGCATCAGAACACAACGGAATAAGCCTTGGCCCTGTAATGGGTGTGAATGAAAATGATGTTTTCTTACCTCATAATGTTGATGCGCCTCGGAACGAGGTTACTGTATGTGAGGATACAGAGTGCTTGAAGCCAGCAGTTGTTGATATTGTCGCAGCAAATGATATGAGTGAGGTTGTGAAAGAGGTAAAATGTAAAGGACCAGAGGAGGATATGAATTCTGTCTCAACATCTGATGACTGTTTGGGTGAAAAGGGTATTTCAGACATTCGGTCAAGTCTATCCTTGACAGATGGGGGAGATTGCATTCCACAAGGATCGCCTCCAACTACGTCTGTTTGCAATGTTTCAACATCAGACAGTAGTAATATCCTTCACAATGGAAGTTGTAGCCCTGATGTACATTTACACCAGAAGCAAACTTTATCTGGTCCTGTTGATGGAAATAAAGATGGGTATGTGGCAACTCAACAGTCAAGATGTATGCGGAAGTCAACGGAAGCTGGACATGCTGCTTTGTTGTACTTTGAAGCAATGCTTCGGACATTGACAAGGACAAAGGAAAGTATTGGTCGAGCAACACGCATAGCTATTGACTGTGCAAAGTTTGGTATTGCAGCTAAgGTCATGGAAATTCTTGCCCATAGTCTGGAAATGGAGTCTAGCCTGCATCGGAGGGTGgatttgttttttcttgttGACTCTATTGCACAGTTTTCTCGTGGTTTAAAAGGTGATGTTTGTGGAGCATATTCATCTGCTATTCAAGCAGTCCTTCCACGGCTATTATCTGCTGCTGCTCCTCCCGGAAATACTGCACAAGAGAACCGTAGGCAGTGTCTCAAGGTTTTAAGGCTGTGGTTGGAGAGAAAAATCCTACCGGAATCCATTGTTCGTCGTCATATCCGGGAACTGGATTTATATAGTAGTTCAGCTTCTGCAGGTATCTTCTTGCGCCGATCGTTGAGAACAGAGAGGGCTTTGGATGACCCTGTTAGAGAAATGGAGGGCATGCTTGTTGACGAATATGGAAGCAACTCAACTTTTCAGCTGCCTGGATTCTGCATGCCCCGAATGCTTAAAGATGAAGATGATGGTGAAGGGAGTGATTCTGATGGCGGGAACTTTGAGGCTGTCACACCGGAGCATACTTCTGAAGTACATGAAATGACTTCTGCAGTTGAAAAACACAGGCATATCTTGGAAGATGTTGATGGTGAACTTGAAATGGAAGATGTGGCTCCCTCAAATGATGTTgaaatgaatttgatttgtaaTGTTGATAGAGGAAATGCCAAGCAGTTTGAGAAGAATCTGCCTCTGTGCTTTGCTCCTCTACATCAGGATGTGCATTCATCttctccaccaccaccatcattccttcctcctcctccgccaccaccacctcctcctcctcctcctcctcctcctccaccaccacctcctaTGCTGCACCACATGTCCTCTACCTCTGATCCATATCACCCCGTAGTTAATTCAAAAGGTTATACTGTTTCACAGACTCTGAAAGACAACCCACTTCACTCTGTGGCTCAGCCAATTGCTGCACCAAGGCATAGCCAACCTATCAATGATGCAGTGCACCATCAAGTCCCTGAATATATACAGATGCACATGCCAGAATCTACTTGCTCTTTCAACAATTTTCCTGTACCACCTCCAGACAATTTTCGACATACTGATGGTGTTACTATGCATAATAAAGGGTACTCTATACGGCCACCTCAACATGTACCATCCAATCAGTTCTCCTTTGTTAATGGGGAACAGCATGTGAAACATCGAAGGGAGGTTCCACCACCCCCTTCTTACTCCAGTAGACAACACTTTGTGCAGAACATGGAGAGAGAGAACTTCTATAATAATCATGAGAGATTAAGACCACCTCCTTATGATTACCAAGAGAGATGGAATGTTCCTGCACCTTATCCTGGTCCTCGGTATCAGGACAAAGGTGTGCCTGCCCCTTATGGTTGTCATCCATGTGAATCTACTAGAATACCAGATCAGGGGTGGAGATTTCCTCCTCGATCTATGAATCAGAGGAACTCCATGCCCTTTAGACCACCCTTTGAAGATGTGATTCCGGTTGCAAACAGAGgTCCGAGCTTTTGGCGGCCTAGGTGA 2451 0.4133 MISTENKSPIQVGKQLTKIQRHETGKDVPLGAIDQVGEEFSDHMVCQAAKVDLEIQSHGQISPILDSKSCDVGSNQDSQDPSLPPNDEDNIRTVNHSNTASDASEHNGISLGPVMGVNENDVFLPHNVDAPRNEVTVCEDTECLKPAVVDIVAANDMSEVVKEVKCKGPEEDMNSVSTSDDCLGEKGISDIRSSLSLTDGGDCIPQGSPPTTSVCNVSTSDSSNILHNGSCSPDVHLHQKQTLSGPVDGNKDGYVATQQSRCMRKSTEAGHAALLYFEAMLRTLTRTKESIGRATRIAIDCAKFGIAAKVMEILAHSLEMESSLHRRVDLFFLVDSIAQFSRGLKGDVCGAYSSAIQAVLPRLLSAAAPPGNTAQENRRQCLKVLRLWLERKILPESIVRRHIRELDLYSSSASAGIFLRRSLRTERALDDPVREMEGMLVDEYGSNSTFQLPGFCMPRMLKDEDDGEGSDSDGGNFEAVTPEHTSEVHEMTSAVEKHRHILEDVDGELEMEDVAPSNDVEMNLICNVDRGNAKQFEKNLPLCFAPLHQDVHSSSPPPPSFLPPPPPPPPPPPPPPPPPPPPPMLHHMSSTSDPYHPVVNSKGYTVSQTLKDNPLHSVAQPIAAPRHSQPINDAVHHQVPEYIQMHMPESTCSFNNFPVPPPDNFRHTDGVTMHNKGYSIRPPQHVPSNQFSFVNGEQHVKHRREVPPPPSYSSRQHFVQNMERENFYNNHERLRPPPYDYQERWNVPAPYPGPRYQDKGVPAPYGCHPCESTRIPDQGWRFPPRSMNQRNSMPFRPPFEDVIPVANRGPSFWRPR 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2080 816 Pfam CID domain 277 400 IPR006569 -
Ssu7g2080 816 PANTHER PWWP DOMAIN PROTEIN 1 816 - -
Ssu7g2080 816 SMART 558neu5 276 407 IPR006569 -
Ssu7g2080 816 MobiDBLite consensus disorder prediction 1 23 - -
Ssu7g2080 816 MobiDBLite consensus disorder prediction 1 18 - -
Ssu7g2080 816 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 816 - -
Ssu7g2080 816 MobiDBLite consensus disorder prediction 460 493 - -
Ssu7g2080 816 MobiDBLite consensus disorder prediction 64 106 - -
Ssu7g2080 816 MobiDBLite consensus disorder prediction 552 587 - -
Ssu7g2080 816 MobiDBLite consensus disorder prediction 550 601 - -
Ssu7g2080 816 MobiDBLite consensus disorder prediction 64 108 - -
Ssu7g2080 816 Gene3D - 275 412 IPR008942 -
Ssu7g2080 816 ProSiteProfiles CID domain profile. 269 410 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2080 Ssu-Chr7 41178371 41184758 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2080 - - gmx:102664053 1375.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2080 7 41178371 41184758 Ssu7g2080 7 41178371 41184758 ECH
Ssu4g1344 4 22248291 22264047 Ssu7g2080 7 41178371 41184758 PCT