Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1344 ATGCCTCCTAGTCGGAGGAAGGGCGGAAAGAAAACGGCGGCGGCGGCTGCCGCCGCTTGCCGGCAGTTTAAGGTCGGCGATCTCGTGCTTGCCAAGGTTAAGGGATTCCCTGCTTGGCCTGCGACGGTGAGTGAGCCGCAGAAGTGGGGTTACTCTACTGATCGGAAGAAAGTTTTTGTTCTCTTCTTTGGAACCCAACAAATAGCTTTCTGCAATCCTGCCGAAATTGAAGCATTTACTGAAGAGAAGAAACAATCTCTTGCCAAACGTCCAGGAAGGGGTGCTGATTTTGCTCGTGCAGTAAAGGAGATTATTGAAAGTTATGaaaaattgaagagagagaataggGATGATGACACCAGCTCTGGTGGTGAAGTTGCTATTGCAATGGTGTCAAATCCACATGATCCATCTGCCAACATAAGGTTAAAGGATCAGATGGATGctccttttataattaattcacaAATGAAATCTTCAAATTGTGTGATTGACAGACCCGAGCTAGTTTGTGCGGCTGAGGATGACTCAACTGTTGCATTGAGGGATGAATCTTATAATTTAGAGGCATCATTGGAGGAACCTACTGATAATGCTATTGTGACTGCAACTGTAAAATCACCATTTCCTATAACCCAGAGAAACGCACCAGTTCGAAGGTCTAGAAGCACAGTACAGGTCCAAAACTTTGTTGTACCTTGTAGTGATGGTGGAAATAATGGTGGCAGTAGTGATGGCAACATACCAGCTTATGCAATTCAGAATATGTCTATAAGAAGGAGTAAACGTATCAGGAAATCACCTAACCTTTTAGGTTGTGATGATACTGATTCACCTGCATTTGCCTCAAATATTAGCATGGAGGTTTCTGAAATTATTACAATCAATTCTGATGCCTTCAGCTTAAGTGAGGGAAGTCCAATAGATTCTAATTTAAAACTTGAACAATCTGAGCCTATTGAGTGCCCTGAAGGTGAAGGTGATTTGAACAAAGGCCTTGATCTTGAAATAAAGGCTGTAATcaacaagaagaaaagaaaacttaacAGGAAGAAGGAAACTAATGATGTTGGTCCTCAGAATGCCAGTCAAAGTTTGCAGAATATGGGTGGAAATTCAAAAGAGAGATGCTCTGACCCTGACCAAGGTGGAGATGAACACTTGCCCCTGTTGAAACGAGCCAGAGTTAGAATGGGTAAATCATCCGCAGAGGCAGAACTCAATAGCATTGTACAAGTTCAGGTGAAAAGTGGTAAGAAAGATATTACTGACTCACCACAGCAGATAATCACATCCTCAAATTGTGAAAATGGTAGCCTTGCTGAAGGAGGCTCGTCAGTGTTGAATGGAGCTCTGGTTAATGTTTCTCCTTCTAACTTAATAGCTCCATGTTCTGAAAATGAGTCTCAGatttgtaaaattaagaaagacCAAATGTTTGGCTGCTCTGTGGATGATGAAGCTGCTTTACCTCCATCTAAACGCATCCATCGTGCTTTAGAAGCTATGTCTGCTCATGCTGCTAAAGGTCAAGCTTGCATGGAATCATCATCCTCTATAATGACATCAAGTGGTAGATGCTGTGTATCTACCATCAAGAGATGTCCTTGTATGACCATTAATAATCAAGGAGGTAACGATTTAGAACAGCAAGTGTTGGATTCTTGTGGCATTGATTCTTCTCATGTTAGTGTGTGTAGTTTCTCAACTCATTCAAATACAATTATTTCCATAGAGAATGAGTCATCTACAGAAATGGATAAGCAGTTGGCTGAGTTGCAACAACATGAAACTGGGAAGGATGTCATGCCAGGTGCTAGCCAACAAGTTAGTGAAGATCTTAGTGATTCTGTTGTTTGTCATCCTGCCAAAATAGATTCACAAATTCAATCACATGAAAAAAATTCTCCTAATCTTGATGTAAAATGTTGTCAAGTTGGAAGCAATCAAGATTCACTGGGTCTGTCATTGTTACCAAATGGTTATGACAATGTCAGACCTGTGAACCATTCAGATGCATCTGATACATTACAGCATGGTGGAATAAGTCTTGATCCTGTGTCAGGTGCCAGTGAAAGTGATAAATTGTTACCTCAAAATAGTATTAATGTGCCTCAGAATGTGGTGGTTGTTTGTGAGGATGTGAAGCAAGCAGTTGGTGACAGCAGCAAAATTAATGACACGCATGAGGTTGTGAAAGAGGTGAAATTTAAAGGACAAGAGGAGGATATGAATTCTGTTTCAATATCAAATGATTATTCAGGTGAAAGGGGTAATTTAGGCATTCTGTCAAGCCCATCCTTGACTGACGGGAGAGTTTGCCTTCCACTAGGTTCACCTCCAAATACAACATCAGTTTGCAATATTTCTACATCAGACAGTAGTAATATCCTTCAAAATGGAAGTTGTAGCCCTGATGTACACCAGAAGAACACTTTATCAGGTCCTACCGATGGATGGAAAGATGGGATTGTGGCAAATGAACGATCAAGATCTGTGGGCAAGTCAACTGAAGCAGGAGATGCTGCTTTGTTGTACTTTGAAGCAATGCTTGGTGCATTGACAAGGACAAAGGAAAGTATTGGTCGAGCAACACGCATAGCTATTGACTGTGCAAAGTTTGGCATTGCAACTAAGGTGGTGGAAATTCTTGTCCACAATCTGGAAATTGAGTCAAGCCTGCATCGGAGGGTGGATCTGTTTTTTCTTGTTGATTCTATTGCTCAGTGTTCTCGAGGGTTGAAAGGAGACATTGGTGGAGTATATCCATCTGCTCTGAAAGCAGTCCTGCCACGCCTATTGTCTGCTGTTGCTCCTCCTGGAAATGCCGCAAAATATAATCGCAGGCAGTGTCTTAAGGTATTAAGGCTGTGGTTGGAGAGAAGAATCCTTCCTGAACCCATTGTTCGACATCATATCCGGGAACTAGACTCATATAGTAGTTCAGCTTCTGCAGTTGTCTTCTCACGTCGTTCATTAAGAACAGAGAGGCCTTTTGATGACCCTGTTAGAGACATGGAGGGTATGCTTGTTGACGAATATGGAAGCAACTCAAGTTTTCAGCTACCTGGATTTTGCATGCCCCGAATGCTTGAAGATGGAGGGAGTGATTCTGATGGAGGGGACTTTGAGGCTGTCACGCCTGAGCATGATTCTAAAACATATGAAGTGCAAGAAACGGCTCATGCTATTGAAAAACGCAGGCATGTCTTGGAAGATGTTGATGGCGAGCTTGAAATGGAAGATGTGGCTCCTTCTGTTGATGTTGAgttgaatttgatttgtaatGTTGACGGAGGAGATGCCAGAGAGTTTGAGAAGAATCTTCCTGTGTCCTTTGCTCCTCCTTTACCACGGGATGTGCCACCGTCTTCCCCACCTCCACCATCATCCCCTCCACCTCCTTTACCTCTACCTCCACCCCCACCTCCTACATTGCACCTCATGTCAGCTACCCCTGACCAATATCATGTTGCAGTTGATTCAAAAGTTTTTGAAGATTCACTGACTGTGAAAGCCAATTTACTCCATCCTATGGCTCAGCCCTTTGCTACATCAATAAATAGTCAACCTATCAGTGATCCAGTGCAGTATACAGTCCATGAATGTAGAGACATGCCAATGCAGATGCCCGAGTCTACTAGCTCTTTCAACACTTTCCCTGTACAACCAACAGACAATTCCAGGAATACTGATGGTGttactatacataataaagGTTACTCGATACCGCCACCTCACCATGTGCCATCCAATCAGTTTTCTTTTGTTCATGGGGAACATCTTATGAAGTCTCAAATGGAGGCTCCACCACCCCCTTCATATTCCAATAGGCACCCCTTTGTGTCGAACATGACGAGAGAGTATGGTTATGACAATCATGAGAGATTAAAACCACTTTCATATGATTACCAAGAGAGATGGAATGTTCCTGCTTCTTATTCTGGTACTCAGTATCATGACAGAGGTGTGACTGCTCCTTACGGTTGTCATCCAAGTGAATCAGCTAGATTACCAGGTCATGGATGGAGATTTCCTCCCCCGTCAATGAATTACAGGGACTCCTTGCCTTTTAGACCACACTTTGAAGATGCAATTCCTGTAGCTAACCAAGGCCCAAGCTTTTGGCAGCCAAGGTGA 4140 0.4196 MPPSRRKGGKKTAAAAAAACRQFKVGDLVLAKVKGFPAWPATVSEPQKWGYSTDRKKVFVLFFGTQQIAFCNPAEIEAFTEEKKQSLAKRPGRGADFARAVKEIIESYEKLKRENRDDDTSSGGEVAIAMVSNPHDPSANIRLKDQMDAPFIINSQMKSSNCVIDRPELVCAAEDDSTVALRDESYNLEASLEEPTDNAIVTATVKSPFPITQRNAPVRRSRSTVQVQNFVVPCSDGGNNGGSSDGNIPAYAIQNMSIRRSKRIRKSPNLLGCDDTDSPAFASNISMEVSEIITINSDAFSLSEGSPIDSNLKLEQSEPIECPEGEGDLNKGLDLEIKAVINKKKRKLNRKKETNDVGPQNASQSLQNMGGNSKERCSDPDQGGDEHLPLLKRARVRMGKSSAEAELNSIVQVQVKSGKKDITDSPQQIITSSNCENGSLAEGGSSVLNGALVNVSPSNLIAPCSENESQICKIKKDQMFGCSVDDEAALPPSKRIHRALEAMSAHAAKGQACMESSSSIMTSSGRCCVSTIKRCPCMTINNQGGNDLEQQVLDSCGIDSSHVSVCSFSTHSNTIISIENESSTEMDKQLAELQQHETGKDVMPGASQQVSEDLSDSVVCHPAKIDSQIQSHEKNSPNLDVKCCQVGSNQDSLGLSLLPNGYDNVRPVNHSDASDTLQHGGISLDPVSGASESDKLLPQNSINVPQNVVVVCEDVKQAVGDSSKINDTHEVVKEVKFKGQEEDMNSVSISNDYSGERGNLGILSSPSLTDGRVCLPLGSPPNTTSVCNISTSDSSNILQNGSCSPDVHQKNTLSGPTDGWKDGIVANERSRSVGKSTEAGDAALLYFEAMLGALTRTKESIGRATRIAIDCAKFGIATKVVEILVHNLEIESSLHRRVDLFFLVDSIAQCSRGLKGDIGGVYPSALKAVLPRLLSAVAPPGNAAKYNRRQCLKVLRLWLERRILPEPIVRHHIRELDSYSSSASAVVFSRRSLRTERPFDDPVRDMEGMLVDEYGSNSSFQLPGFCMPRMLEDGGSDSDGGDFEAVTPEHDSKTYEVQETAHAIEKRRHVLEDVDGELEMEDVAPSVDVELNLICNVDGGDAREFEKNLPVSFAPPLPRDVPPSSPPPPSSPPPPLPLPPPPPPTLHLMSATPDQYHVAVDSKVFEDSLTVKANLLHPMAQPFATSINSQPISDPVQYTVHECRDMPMQMPESTSSFNTFPVQPTDNSRNTDGVTIHNKGYSIPPPHHVPSNQFSFVHGEHLMKSQMEAPPPPSYSNRHPFVSNMTREYGYDNHERLKPLSYDYQERWNVPASYSGTQYHDRGVTAPYGCHPSESARLPGHGWRFPPPSMNYRDSLPFRPHFEDAIPVANQGPSFWQPR 1379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1344 1379 MobiDBLite consensus disorder prediction 1111 1150 - -
Ssu4g1344 1379 MobiDBLite consensus disorder prediction 346 387 - -
Ssu4g1344 1379 SMART 558neu5 846 977 IPR006569 -
Ssu4g1344 1379 Pfam PWWP domain 26 108 IPR000313 -
Ssu4g1344 1379 SMART PWWP_4 23 80 IPR000313 -
Ssu4g1344 1379 MobiDBLite consensus disorder prediction 670 697 - -
Ssu4g1344 1379 SUPERFAMILY Tudor/PWWP/MBT 20 115 - -
Ssu4g1344 1379 Gene3D - 14 119 - -
Ssu4g1344 1379 PANTHER PWWP DOMAIN PROTEIN 1 1379 - -
Ssu4g1344 1379 ProSiteProfiles PWWP domain profile. 25 82 IPR000313 -
Ssu4g1344 1379 CDD HDGF_related 21 107 IPR035496 -
Ssu4g1344 1379 Gene3D - 845 985 IPR008942 -
Ssu4g1344 1379 PANTHER HEPATOMA-DERIVED GROWTH FACTOR-RELATED 1 1379 - -
Ssu4g1344 1379 MobiDBLite consensus disorder prediction 355 375 - -
Ssu4g1344 1379 Pfam CID domain 847 969 IPR006569 -
Ssu4g1344 1379 ProSiteProfiles CID domain profile. 839 980 IPR006569 -
Ssu4g1344 1379 MobiDBLite consensus disorder prediction 1115 1148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1344 Ssu-Chr4 22248291 22264047 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1344 - - gmx:112997599 2135.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1344 4 22248291 22264047 Ssu4g1344 4 22248291 22264047 ECH
Ssu4g1344 4 22248291 22264047 Ssu7g2080 7 41178371 41184758 PCT