Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2071 ATGGCGGCTGGCCCAACAACATCACCCTCCGATCGACCCACCATGGTTCCTCCCCCAATGCTCGTCTCCGACTCCTTCGCCAAGGACGCCATCCTCGCCTGGTTCCGAGGCGAGTTCGCCGCCGCCAACGCCATCATCGACGCCCTCTGCGCCCACCTCGCAGCCTCCGCCTCCGACTACGACGCCGTCTTCGCCGCCATCCACCGCCGCAGGCTCAATTGGATCCCCATCCTCCAGATGCAGAAGTACCACTCCATCGCCGACGTCACCCTCGAGCTCAGCAGAGTCGCCGACAGAAACCACAGCGCCGTCGACGACAAACACAAAACCCACGAGAAACCCACGTCCGCCGAGAGTGTCGGAAATGGAGCTGATGAACACGAGGAGTATGAGTCTCCCGAAAGCGAGATTACTGATTCagGATCTCAAGAAATGCAGGCTAGTTCCATGAACGTTAATATATGTTCCAATCATGAAGAGTGTGAAGGACGTTCTTCACAGTTTAAGTTGACAAAAGGTTTCACAGCAAAAGAGTCTGTGAAGGGACATATGGTGAATGTAGTAAAAGGATTGAAATTATATGAGGACATTTTCACTGATTCAGAACTGTGCAAGCTGACAGATTTTGTGAATGAGATCCATGCTGCTGGCCAGAATGGGGAACTGTCAGGtgaaacttttatattattcaacAAGCAGATGAAGGGAAACAAGAGAGAGCTGATTCAGCTGGGTGTTCCAATATTTGGACAGATAAAGGAGGACgcaaaaaGCAATATAGAGCCAATTCCAGCACTTCTCCAAGGTGTCATTGATCACCTTATTCAGTGGCAATTACTTCCCGAGTACAAAAGACCAAATGGTTGTATCATCAACTTTTTTGAAGAGgGGGAGTTTTCTCAGCCATTCCTGAAACCACCGCATCTGGATCAACCAGTGTCCACTCTTCTTCTCTCTGAATCAACTATGGCTTTTGGGCGTATACTTATGAGTGAAAATGATGGGAACTACAAGGGACCACtcatgctctcattgaagaaggGGTCTCTTTTAGTGATGAGAGGAAACAGTGCTGACACGGCAAGGCACGTAATGTGTCCATCCCCTAACAGAAGGGTCAGCATCACCTTCTTCAGAGTGAGGCCAGACTCCAATCAATACCAATCACCAACTCCTACCATGACAAGTGCGATGACTCTGTGGCAACCTGGCATTGCTAGCCCACATGCCCTGCCAAATGGTGCTCTGAGTAGCTATGAGGGTATGGATATGATGCCCAAATGGGGAATGCTTCGCGGCCCAATGGTGATGCTAACCCCTATGCGTCCTGTGGCATTGAACACCCGCAAACTTGCTGGTGGTGGGACTGGGGTGTTTTTGCCCTGGAATGTGCCAACTAGAAAACCTGCCAAGCATCTTCCCCCACGAGCCCAAAAAGAAAGGCTTCTCACATTTCCTTCCCCTGTTGAACCGCAAATGGAAGAGTCCACTTCTGAACCTAGCATTTGTGTTGAAGGATAA 1521 0.4872 MAAGPTTSPSDRPTMVPPPMLVSDSFAKDAILAWFRGEFAAANAIIDALCAHLAASASDYDAVFAAIHRRRLNWIPILQMQKYHSIADVTLELSRVADRNHSAVDDKHKTHEKPTSAESVGNGADEHEEYESPESEITDSGSQEMQASSMNVNICSNHEECEGRSSQFKLTKGFTAKESVKGHMVNVVKGLKLYEDIFTDSELCKLTDFVNEIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGQIKEDAKSNIEPIPALLQGVIDHLIQWQLLPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPVSTLLLSESTMAFGRILMSENDGNYKGPLMLSLKKGSLLVMRGNSADTARHVMCPSPNRRVSITFFRVRPDSNQYQSPTPTMTSAMTLWQPGIASPHALPNGALSSYEGMDMMPKWGMLRGPMVMLTPMRPVALNTRKLAGGGTGVFLPWNVPTRKPAKHLPPRAQKERLLTFPSPVEPQMEESTSEPSICVEG 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2071 506 MobiDBLite consensus disorder prediction 484 506 - -
Ssu7g2071 506 MobiDBLite consensus disorder prediction 101 115 - -
Ssu7g2071 506 MobiDBLite consensus disorder prediction 101 147 - -
Ssu7g2071 506 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 10 504 - -
Ssu7g2071 506 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 10 504 IPR044842 GO:0003729|GO:0006402|GO:0032451
Ssu7g2071 506 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 285 382 IPR005123 -
Ssu7g2071 506 Gene3D - 174 389 IPR037151 -
Ssu7g2071 506 SUPERFAMILY Clavaminate synthase-like 182 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2071 Ssu-Chr7 41007343 41012324 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2071 K10767 - gmx:100791586 909.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2071 7 41007343 41012324 Ssu7g2071 7 41007343 41012324 ECH
Ssu4g1359 4 22454928 22462123 Ssu7g2071 7 41007343 41012324 PCT