Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1359 ATGGCGGCTGTCCCAGCATCGCGGACCGATCCACCGGCAATGGTGCCGCCGCCGCTGTTGGTCTCCGACTCCTACGCCAAGGACGCCATTCTCGCCTGGTTCCACGGCGAGTTTGCCGCCGCCAACGCCATCATCGACGCCCTCTGCGGCCACCTCGCTCAGCTCGCAGCCGCCTCCTCCAACTACGACGCCGCCTTCGCCGCCATCCACCGCCGCCGGCTCAACTGGATCCCCGTCATCCAGATGCAGAAGTATCACTCCATTGCTGACGTGGCTCTCGAGCTCCGCAGAGTCGCCGAGAAGAAAACGGAGTCCGAAGGCGCGAAGAAAAGCGAGAGCAGCTTCATCGAGGATGCGAAATTGGAGAAGGAAACGGTGGAAAGTGGTGGAAACGAAGGTGACGAAGCTGCAGCGGAGTATGATTCGCCGGACAGTGAGATTACTGATTCAGGATCTCAGGAAATGCAACCTAgtgtgatgaaaaataatatatgttccAATCATGAAGAATGTGAAGGACGTTCTTCACAGATAAAGCTAACAAAAGGTTTCACAGCAAAGGAGTCCGTGAAGGGGCATATGGTGAATGTTGTGAAAGGATTAAAGTTGTATGAGGACGTTTTTTCTGAATCAGAAATCTGCAAGCTGACTGATTTTGTGAATGAGATTCATGCTGCTGGCCAGAACGGGGAACTCTCAGGTGaaacttttatactattcaACAAACAGATGAAGGGAAACAAGAGAGAGCTGATTCAGTTGGGTGTTCCGATATTTGGACAAATAAAGGACGATACCAAAAgcAATATAGAGCCAATTCCAGCACTTCTGCATGATGTCATTGATCACCTTATTCAATGGCAATTAATTCCAGAGTACAAAAGGCCTAATGGTTGTATCATCAACTTTTTTGGAGAGGGGGAATTTTCTCAGCCATTCCTGAAACCACCGCATTTGGACCAACCTCTATCCACCTTTCTTCTCTCTGAATCAACTATGGCTTTTGGGCGTATCCTTATGAGTGAAAATGATGGGAACTACAAGGGGCCACTCATGCTCTCATTGAAGGAGGGGTCTCTTTTAGTGATGAGAGGAAACAGTGCTGACATGGCAAGGCACGTGATGTGTCCATCCCCTAACAGAAGGGTGAGCATCACCTTCTTTAGAGTGAGGCCAGACTCCAATCAATGTCAATCACCAACTCCTGCCATGACAACTGCGATGACTCTTTGGCAACCTGGCATTGCTAGCCCATTTACTTTGCCAAATGGAGCTCTAAGTGGCTATGAGGCTATGGATATGATGCCCAAATGGGGAATGGTTAGTGCTCCAATGGTCATGCTAACCCCTATGCGCCCTGTGGCAGTGAACACTAGCAAACTTCCTCGTGGTGGGACTGGGGTTTTCTTGCCTTGGAAGGGGGCATCCAGAAAACACGCAAGGCATCTTCCACCGCGTGCCCAAAAAGGACGCCTTATGGCATTACCCTCCCCAGTTGAATCACACTTTGGAGAGTCTACTTCTGAACCCAACATTGCTGTTGAAGGACAGGTATGA 1557 0.4888 MAAVPASRTDPPAMVPPPLLVSDSYAKDAILAWFHGEFAAANAIIDALCGHLAQLAAASSNYDAAFAAIHRRRLNWIPVIQMQKYHSIADVALELRRVAEKKTESEGAKKSESSFIEDAKLEKETVESGGNEGDEAAAEYDSPDSEITDSGSQEMQPSVMKNNICSNHEECEGRSSQIKLTKGFTAKESVKGHMVNVVKGLKLYEDVFSESEICKLTDFVNEIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGQIKDDTKSNIEPIPALLHDVIDHLIQWQLIPEYKRPNGCIINFFGEGEFSQPFLKPPHLDQPLSTFLLSESTMAFGRILMSENDGNYKGPLMLSLKEGSLLVMRGNSADMARHVMCPSPNRRVSITFFRVRPDSNQCQSPTPAMTTAMTLWQPGIASPFTLPNGALSGYEAMDMMPKWGMVSAPMVMLTPMRPVAVNTSKLPRGGTGVFLPWKGASRKHARHLPPRAQKGRLMALPSPVESHFGESTSEPNIAVEGQV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1359 518 Gene3D - 184 399 IPR037151 -
Ssu4g1359 518 SUPERFAMILY Clavaminate synthase-like 191 391 - -
Ssu4g1359 518 PANTHER 2OG-FE(II) OXYGENASE FAMILY OXIDOREDUCTASE 3 514 - -
Ssu4g1359 518 MobiDBLite consensus disorder prediction 101 130 - -
Ssu4g1359 518 MobiDBLite consensus disorder prediction 101 157 - -
Ssu4g1359 518 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 3 514 IPR044842 GO:0003729|GO:0006402|GO:0032451
Ssu4g1359 518 MobiDBLite consensus disorder prediction 498 518 - -
Ssu4g1359 518 MobiDBLite consensus disorder prediction 501 518 - -
Ssu4g1359 518 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 295 392 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1359 Ssu-Chr4 22454928 22462123 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1359 K10767 - gmx:100776159 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1359 4 22454928 22462123 Ssu4g1359 4 22454928 22462123 ECH
Ssu4g1359 4 22454928 22462123 Ssu7g2071 7 41007343 41012324 PCT