Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2049 ATGACCGGAGTAGTCATGGTTACCAAGGGCGGTGGATGCAAGAGGACGAGGGCGGCGCGAACCGCCGAGGAAGAAGAGCAGAACCAGCTTTCCCTCGTGGCGTTTCTCTTGGCCGCGATCAGAAAATCGATGGTTTCGTGCAGGGTAGACCCACCCGACGATGTAATCTCCACCGTCCATCACATGGAGATCGGATGGCCAACCAACGTTCAGCACATCACTCATGTCACCTTCGACCGCTTCAACGGCTTCCTCGGCCTCCCCCTCGAATTCCAAGTCGAGATTCCTGCTCGGGTCCCCAGTGCTAGTGTAAGTGTGTTTGGCGTCTCAGCAGAATCTATGCAGTGTTCTTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTCTTGCTAATGCAGGACCGTCTATACTCACAGGGAGGCTTAAAGgCTGAAGGTATATTTCGCATAAACCCAGAAAATAGTCAAGAGGAGCATGTGAGGGACCAGTTGAATAGGGGCATTGTGCCGGATGACATTGATGTTCACTGCTTGGCAGGACTAATTAAAGCCTGGTTCAGGGAACTACCTGCAGGAGTGCTAGATGGACTTTCCCCTGAGCAAGTTCTTCAGTGCAACACTGAAGAAGAATCTGTTGAGCTTGTGAAGCAGCTAAAGCCAACTGAGTCTGCCTTACTCAGCTGGGCTATTGATCTCATGGCTGATGTTGTAGAAGAGGAGGAATTCAACAAAATGAATGCAAGAAATATAGCAATGGTTTTTGCTCCAAACATGACTCAGATGTCTGATCCTCTAACTGCCCTGATGCATGCGGTTCAAGTCATGAACTTACTCAAGACACTTATAATGAAGACACTCAGAGAACGTGAAGAAACAGCAACAGGTGGCTATTCTCCCATGTCATTTCATTCATCAGATCGCCAGTCTGAGGATGAATATGACAGTCAGCGAGAAATGGACACAAGCGGTGAATTGAGAGGGACCAAATCGGATTATGATGATCATGCTCACTATGGTCATAGCAGTGAAGGGGAGGCTGAATCTTTAAGCGAGATAGAGGAGTGCTTCTTGAAGCAGTTGGATGAGAACACAAAAGGATTCTCAGAAGGACCTGCAGGTCATCTGGATAAGTATGTTAGTACCAGAAGTTGCTCTGGCTATAGCATGGAACCTTCTATATCTGTTGCTGATGGCAAAGCAGGGAATTCCTGTTTGAGCTCAAGCGTTGACATAAGTAGTCCATCAATAGGATGTACAGGCACCAAAGATGTGGAGATGATGGATAAATTTGCAGATTCTATTTCTCCTGTCACTGCTTGCTTCTAG 1326 0.4721 MTGVVMVTKGGGCKRTRAARTAEEEEQNQLSLVAFLLAAIRKSMVSCRVDPPDDVISTVHHMEIGWPTNVQHITHVTFDRFNGFLGLPLEFQVEIPARVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQDRLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDDIDVHCLAGLIKAWFRELPAGVLDGLSPEQVLQCNTEEESVELVKQLKPTESALLSWAIDLMADVVEEEEFNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETATGGYSPMSFHSSDRQSEDEYDSQREMDTSGELRGTKSDYDDHAHYGHSSEGEAESLSEIEECFLKQLDENTKGFSEGPAGHLDKYVSTRSCSGYSMEPSISVADGKAGNSCLSSSVDISSPSIGCTGTKDVEMMDKFADSISPVTACF 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2049 441 MobiDBLite consensus disorder prediction 292 347 - -
Ssu7g2049 441 ProSiteProfiles Rho GTPase-activating proteins domain profile. 109 290 IPR000198 GO:0007165
Ssu7g2049 441 SMART PBD_5 64 98 IPR000095 -
Ssu7g2049 441 SUPERFAMILY GTPase activation domain, GAP 105 283 IPR008936 GO:0007165
Ssu7g2049 441 PANTHER MKIAA1688 PROTEIN 1 414 IPR044785 GO:0005096
Ssu7g2049 441 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 414 - -
Ssu7g2049 441 Pfam RhoGAP domain 126 260 IPR000198 GO:0007165
Ssu7g2049 441 ProSiteProfiles CRIB domain profile. 64 77 IPR000095 -
Ssu7g2049 441 SMART RhoGAP_3 123 286 IPR000198 GO:0007165
Ssu7g2049 441 MobiDBLite consensus disorder prediction 305 347 - -
Ssu7g2049 441 Pfam P21-Rho-binding domain 63 93 IPR000095 -
Ssu7g2049 441 Gene3D Rho GTPase activation protein 96 290 IPR008936 GO:0007165
Ssu7g2049 441 Gene3D CRIB domain 60 95 IPR036936 -
Ssu7g2049 441 CDD RhoGAP 126 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2049 Ssu-Chr7 40682045 40684295 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2049 - - gmx:100807134 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2049 7 40682045 40684295 Ssu7g2049 7 40682045 40684295 ECH
Ssu4g0712 4 11101126 11103796 Ssu7g2049 7 40682045 40684295 PCT