Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0712 ATGACGGGGCAAGTGGTGGTGACGAGCGGTGGCGGGAAGGGGCGGAGAGGAGGCGAAGAAGATCAGAACCCGGCGTCGCCGGTGGCGGTTCTGTTGGCGGCGCTGAGAAAATCGATGGTGGCGTGCAGCGTGGACAGTCCCGACGATGTAATCTCCGCCGTCCATCATCCCATGGAGATCGGATGGCCCACGAACGTTAAGCATGTTAGTCATGTCACGTTCGATCGCTTCAATGGTTTTCTTGGTCTTCCCCTTGAGTTAGAGGTTCATGTCCCCGCTCCGGTTCCCAGTGCTAGCGTTAGTGTGTTTGGCGTCTCAGCAGAATCAATGCAGTGTTCCTATGATTCAAAAGGAAACAGTGTCCCCACTATTCTATTGCTAATGCAGGAGCGATTATACTCACAAGGAGGCCTAAAGGCTGAAGGTATATTTCGCATAAATCCAGAAAACAGTCAAGAGGAGCATTTGAGGGAGCAGTTGAATAAGGGCATTGTGCCAGATGACATTGATGTCCACTGCTTGGCAGGCCTAATTAAAGCATGGTTCAGAGAACTTCCTTCAGGAGTGCTAGATGGACTTTCCCCTGAGCAAGTTCTTCAGTGCAACACAGAAGAAGAATCTGTTCAGCTTGTGAAGCAGCTAAAGCCAACTGAGTCAGCCTTGCTCAACTGGGCTACTGATCTCATGGCTGATGTTGTAGCAGAAGAGGATTGTAACAAAATGGATGCAAGAAACATTGCAATGGTTTTTGCTCCAAATATGACTCAGATGTCTGATCCACTAACTGCTCTGATGCATGCTGTCCAAGTGATGAATTTACTAAAGACCCTAATACTGAAGACACTTAGAGAACGCGAAGAAACAGCAGCAGCAGGATATTCGCCCATGTCATTTCATTCATCAGATCGCCGATCTGAGGATGACTATGATAGTCAGCAAGAAATGGAGACCAGTGGTGAATTGAGACAGACCAAGTCAGATGATGACGATCATGATGTTAACTATAGTCATGGCAGTGAAGAGGAAGGAGAGGCAGATGCTGATGCATCGGTAAGTGAGATAGTGGAATGCTTCTTGAAGCGTTTGgatgataaaacaaaaagattctCAGAAGAACCTGCAGGGTATTTGCATGAGAAGTTAGAGAGCCCCAGGAGTTGCTCTGGCTATAACTTGGAATCTGCTTTATCATTTACTGATGTCAAAACTGGGAATTCCTGCTCGAGTTCATCTTCTGAAGATGACTCAAGAACAACTCTGACTGCTGAGGAATCAAATGCTGACACGAGTAGTCCATCAATAGAAAGTACTAGCACGAATGATGTGGAGATGATTGATAAATTTACAGATTCTGTTTCACTAGTCCCACTGTTTGCATCTAGTTAA 1386 0.4589 MTGQVVVTSGGGKGRRGGEEDQNPASPVAVLLAALRKSMVACSVDSPDDVISAVHHPMEIGWPTNVKHVSHVTFDRFNGFLGLPLELEVHVPAPVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHLREQLNKGIVPDDIDVHCLAGLIKAWFRELPSGVLDGLSPEQVLQCNTEEESVQLVKQLKPTESALLNWATDLMADVVAEEDCNKMDARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLILKTLREREETAAAGYSPMSFHSSDRRSEDDYDSQQEMETSGELRQTKSDDDDHDVNYSHGSEEEGEADADASVSEIVECFLKRLDDKTKRFSEEPAGYLHEKLESPRSCSGYNLESALSFTDVKTGNSCSSSSSEDDSRTTLTAEESNADTSSPSIESTSTNDVEMIDKFTDSVSLVPLFASS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0712 461 PANTHER MKIAA1688 PROTEIN 1 461 IPR044785 GO:0005096
Ssu4g0712 461 SMART RhoGAP_3 119 282 IPR000198 GO:0007165
Ssu4g0712 461 CDD RhoGAP 122 272 - -
Ssu4g0712 461 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g0712 461 SMART PBD_5 60 94 IPR000095 -
Ssu4g0712 461 CDD CRIB 58 88 - -
Ssu4g0712 461 Pfam P21-Rho-binding domain 59 87 IPR000095 -
Ssu4g0712 461 Gene3D Rho GTPase activation protein 92 284 IPR008936 GO:0007165
Ssu4g0712 461 SUPERFAMILY GTPase activation domain, GAP 101 279 IPR008936 GO:0007165
Ssu4g0712 461 Gene3D CRIB domain 55 91 IPR036936 -
Ssu4g0712 461 MobiDBLite consensus disorder prediction 320 344 - -
Ssu4g0712 461 MobiDBLite consensus disorder prediction 401 442 - -
Ssu4g0712 461 MobiDBLite consensus disorder prediction 290 349 - -
Ssu4g0712 461 ProSiteProfiles Rho GTPase-activating proteins domain profile. 105 286 IPR000198 GO:0007165
Ssu4g0712 461 Pfam RhoGAP domain 122 256 IPR000198 GO:0007165
Ssu4g0712 461 ProSiteProfiles CRIB domain profile. 60 73 IPR000095 -
Ssu4g0712 461 PANTHER RHO GTPASE ACTIVATION PROTEIN-RELATED 1 461 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0712 Ssu-Chr4 11101126 11103796 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0712 - K20642 gmx:100812700 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0712 4 11101126 11103796 Ssu4g0712 4 11101126 11103796 ECH
Ssu4g0712 4 11101126 11103796 Ssu7g2049 7 40682045 40684295 PCT