Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2038 ATGTTAAGTGCACGTGTCGCAACATCACAGGTGGAAGCCTCTCCAAtgagacaaataattaaattcaaaaccaAAGACAACAGTATATATGGTCCTCAATTTCTCTGCTTGGAATATACTTCCACCCTTGGACTATGCTCAGGTGAGTTAAACAACGAGTCACGAGTTCAACTTGAATTCAACCAGGCTCTTGGTGTTGGTGATATCAAAGACAAGATGGCTGGAATGATGAAGAATCAACCGTCACACTGGTGGTGGCTTGAGAGTCACAGCAACACTAGACGATCCCCTTGGCTTCACTCCACTCTCGCTGAGCTAAATGAGAAGACAAAGGCAATGTTAAAACTAATTGAAGAAGATGCAGATTCCTTTGCCCAACGTGCAGAGATGTATTACAAGAAGAGACCACAGCTTGTGGGCATGGTTGAAGATTTCTATAGGACACACCGCTCATTAGCTGAGCGGTATGATCAAGTCACCGGAATTCGCCTGCAGAAGACAGGGGGATCCCCTTTTTCTCCACTCaagcatcatcaatcagagaAGTTGATGGATTTTGCAGATAACAATTATGATAGCTATTCTGAGAGTTGTTTCGTAGAGGAGTCTGGGGAATCTGAAGTTGATGATCCTGAgcaagaggaggaagaggataCCAAATTTGATAACAGTACAGAAGAGGAGGAAGTTCGGTTTGTGGCTGCAAATGATGAAATGATGGGACTGAGGAAAGAAATTGAGAGACTTGGTGAAGAGAACAAGGATCATATGGATCAAATTAAGgagaaatataacatttatgATGAAGTAATGATGTTGAGGGAAGAAATAGAACGACTCAGAGAAGAGAATAGAGTGCAGAAGGATGAACTCAACCAGAAGGGTATCATTTGTGTTGAAGTAATGATGTTGAGGGAAGAACTAGAACGACTCAGAAAAGAGAGTAGAGTGCAGAAGGATGAACTCAACCAGAAAGGTATCATTTGTAGTGAAGTAATGATGTTGAGGGAAGAAATAGAACAACTCGGAAAAGAGAATAGAGCGCAGAAGGATGAACTCAACCAGAAAGGTATTATTTGTGGTGAAGTAATGATGTTGAGGGAAGAAATAGAACGACTCATAAAAGAGAATAGAGCGCAGAAGGATGAACTCAGGCAGAAAGGTACCATTTGTGGTGAAGTAATGATGCTAAGGGAAGAGATGGAAAGAGTCGGAGAAGAGAATAGGGTACAGAAGGACCATCTCAAGCAAAAAGACCAAGAGAAAATAGAGGTGATAAGACACCTGAGTTTAGCTGTGGATGTGCTGAAGCAGGAGAATGTAAAGATGAGAAACTTCATTGCTATGGAATCTACCAACAAGTGGAAGAACCCATTTGAGTTTAAGAAACTCATGGGATCATTATCGGGGAAGTTGTTTAATGGACTTACAAGGAATCAACCTAGTATTGTAGCTCTCTAG 1461 0.3949 MLSARVATSQVEASPMRQIIKFKTKDNSIYGPQFLCLEYTSTLGLCSGELNNESRVQLEFNQALGVGDIKDKMAGMMKNQPSHWWWLESHSNTRRSPWLHSTLAELNEKTKAMLKLIEEDADSFAQRAEMYYKKRPQLVGMVEDFYRTHRSLAERYDQVTGIRLQKTGGSPFSPLKHHQSEKLMDFADNNYDSYSESCFVEESGESEVDDPEQEEEEDTKFDNSTEEEEVRFVAANDEMMGLRKEIERLGEENKDHMDQIKEKYNIYDEVMMLREEIERLREENRVQKDELNQKGIICVEVMMLREELERLRKESRVQKDELNQKGIICSEVMMLREEIEQLGKENRAQKDELNQKGIICGEVMMLREEIERLIKENRAQKDELRQKGTICGEVMMLREEMERVGEENRVQKDHLKQKDQEKIEVIRHLSLAVDVLKQENVKMRNFIAMESTNKWKNPFEFKKLMGSLSGKLFNGLTRNQPSIVAL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2038 486 Coils Coil 301 325 - -
Ssu7g2038 486 MobiDBLite consensus disorder prediction 199 226 - -
Ssu7g2038 486 Coils Coil 332 356 - -
Ssu7g2038 486 MobiDBLite consensus disorder prediction 202 223 - -
Ssu7g2038 486 ProSiteProfiles Networked (NET) actin-binding (NAB) domain profile. 82 163 IPR011684 GO:0003779
Ssu7g2038 486 PANTHER PROTEIN NETWORKED 4A 82 294 - -
Ssu7g2038 486 PANTHER PROTEIN NETWORKED 3A-RELATED 82 294 - -
Ssu7g2038 486 Coils Coil 363 387 - -
Ssu7g2038 486 Pfam KIP1-like protein 84 157 IPR011684 GO:0003779
Ssu7g2038 486 Coils Coil 263 294 - -
Ssu7g2038 486 PANTHER PROTEIN NETWORKED 3A-RELATED 362 486 - -
Ssu7g2038 486 Coils Coil 232 259 - -
Ssu7g2038 486 PANTHER PROTEIN NETWORKED 4A 362 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2038 Ssu-Chr7 40537460 40540405 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2038 - - gsj:114372579 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2038 7 40537460 40540405 Ssu7g2038 7 40537460 40540405 ECH
Ssu4g0703 4 10984053 10985840 Ssu7g2038 7 40537460 40540405 PCT