Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1985 ATGACTTTCTCCCTTTCCTTCACCACTGTGCTTTCCCTGCTCGCTCTCATTCTGCTACATGGCCATGCCTTCCCAGTCCGTTACAATCACCCCATACACCATCGCCACCCTCGCTTTGCCACTCATAACTACAGAGACGCTCTCACCAAATCCATCCTCTTCTTTGAAGGCCAGAGGTCAGGGAGGCTCCCTCCTAACCAGAGAATGTCGTGGAGGAGGGACTCTGGTCTCTCTGATGGCTCAGCCAtgcatGTTGATTTGGTTGGAGGATACTACGATGCTGGGGACAATGTCAAATTTGGTTTCCCCATGGCTTTCACCACCACCATGCTTTCATGGAGCGTTATTGAGTTTGGTGGGCTGATGAAAGGAGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGCCACTGATTATCTTCTCAAAGCTACTGCGCATCCAAACACCATTTATGTTCAGGTGGGAGATGCCAAGAAGGACCACGCTTGTTGGGAGAGACCCGAGGACATGGACACTCCAAGAAGCgtgtttaaaataaatgcaaacaCGCCTGGTTCAGAAGTTGCCGCAGAAACTGCTGCGGCTCTTGCAGCTGCTTCTCTGGTTTTCAGAAGAACCGACCCCACATACTCCAAAGTTTTAGTGAGGAGGGCCGTTAGAGTCTTCCAGTTTGCTGATAAATACAGGGGATCCTACAGCAACGCCTTGAAACCCTTTGTGTGCCCCTTCTATTGCTCATACTCTGGTTATCAGGATGAGCTGCTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCAATGTACCTAAACTACATTAAAGTCAATGGCCACATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGGGCAAGGATACTTCTTTCCAAGGAATTCCTTGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGCCATGCGGACAATTTCGTCTGTTCTCTTATTCCTGGGACATCTTTCTCTTCTGCCCAATATACCCCAGGTGGGCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTGCTGTTAACATATGCCAAATACTTAACCTCGGCCCATATGGTTGTGAACTGTGGTGGAATCACGGTGACCCCAAAGAGGCTCCGCACAATAGCCAAGAAACAggtgGACTACTTGCTTGGAGACAACCCGTTGAAGATGTCGTACATGGTGGGGTATGGTCCAAGGTACCCACGAAGGATACACCATAGGGGTTCATCTCTACCGTCCATTGCTGTACACCCGGGAAAGATCCAGTGTTCTGCAGGCTTCAGTGTGATGAATTCGCAATCCCCCAACCCAAACATTCTAGTGGGGGCCGTTGTTGGTGGACCAGACCAACATGATAGGTTCCCAGATGAACGGTCAGATTATGAGCAATCAGAGCCAGCCACGTATATTAACTCACCCCTTGTAGGAGCACTGGCGTATCTTGCACACTCATTTGGTCAACTCTAG 1524 0.4908 MTFSLSFTTVLSLLALILLHGHAFPVRYNHPIHHRHPRFATHNYRDALTKSILFFEGQRSGRLPPNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGLMKGELQNAREAIRWATDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKINANTPGSEVAAETAAALAAASLVFRRTDPTYSKVLVRRAVRVFQFADKYRGSYSNALKPFVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGHILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLIPGTSFSSAQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTSAHMVVNCGGITVTPKRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMNSQSPNPNILVGAVVGGPDQHDRFPDERSDYEQSEPATYINSPLVGALAYLAHSFGQL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1985 507 Gene3D - 40 507 IPR012341 GO:0005975
Ssu7g1985 507 PANTHER ENDOGLUCANASE 17 12 507 - -
Ssu7g1985 507 PANTHER ENDO-1,4-BETA-GLUCANASE 12 507 - -
Ssu7g1985 507 Pfam Glycosyl hydrolase family 9 44 497 IPR001701 GO:0004553|GO:0005975
Ssu7g1985 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 400 426 IPR018221 -
Ssu7g1985 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 473 491 IPR033126 -
Ssu7g1985 507 SUPERFAMILY Six-hairpin glycosidases 41 505 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1985 Ssu-Chr7 39497695 39499939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1985 1 503 Glycoside Hydrolase AT1G02800 75.595 0.0 780
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1985 K01179 - gmx:100777718 974.156
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1985 7 39497695 39499939 Ssu7g1985 7 39497695 39499939 ECH
Ssu4g0628 4 9961735 9963630 Ssu7g1985 7 39497695 39499939 PCT