Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0628 ATGCTCTCACCAAATCCATCATCTTCTTTGAGGGTCAGAGGTCAGGGAAGCTCCTTTCTAACCAGAGAATCTCTTGGAGGAGTGACTCCGGCCTCTCTGATGGCTCAGCCATGCATTGCAGGGGACAAAGTTAAGTTTGGTTTTCCCAGGgccttcaccaccaccaccatgctTTCGTGGAGTGTTGTTGAGTTTGGTGGGGTGGGAGATGCTGAGAAGGACCACGCTTGTCGGGAGAGACTTGAGGACATGGAAACCCCGACAAGTGTCTTTAAAGTAGACAAAAACAATCCTGGTTCAGATGTGGCTGAGAAAATTGCTGCGGCCCTTGCAGCTGCttctttggttttcaaaaaAACTGACCCGGCCTACTCCAAAACTTTGGTTAGGAGGGCTATCCGTTTTGCTGATAAATATAGGGGACCCTACAGCAATGGGTTGAAGCCTATTGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTGCTTGGCTTCACAAGGCTACTAAGAACCTAATGTGCCTAAACTACATTAAGGTTAATGGACAGACCCTTGGGGTTGCAGATTTCGACAATACATTTGGATGGGATGACAAGCATGTTAGAGCAATGATACTGCTTTCTAAGGAATTTCTTGTTCGAAAGGTGCAAACCCTGCCTGACTACAAAGGTCACACGAACGATTTTATCTGTTCTGTTATCCCTGGTTCCTCTTCTACCCAATTCACCCCAGGTGAgTTACTATTCACTTACGCTGAATACTTGACCAAAGCCCATATGGTTGTGAACTATGGTGGAACAACTGTGACTCCAAAAAGGCTCCGGTCTATAGCCAAAAAACAgGTGGATTACTTGGTAGGAGACAACCCCTTGAAGATGTCCTATATGGTGGGGCATGGTCCACGGTGCGAAGGATACACCACAGGGGATCATCGCCTCCGTCCATTGTTGTTCACCCTGGCAAGATCCAATGCTCAGTAG 1002 0.4561 MLSPNPSSSLRVRGQGSSFLTRESLGGVTPASLMAQPCIAGDKVKFGFPRAFTTTTMLSWSVVEFGGVGDAEKDHACRERLEDMETPTSVFKVDKNNPGSDVAEKIAAALAAASLVFKKTDPAYSKTLVRRAIRFADKYRGPYSNGLKPIVCPFYCSYSGYQDELLWGAAWLHKATKNLMCLNYIKVNGQTLGVADFDNTFGWDDKHVRAMILLSKEFLVRKVQTLPDYKGHTNDFICSVIPGSSSTQFTPGELLFTYAEYLTKAHMVVNYGGTTVTPKRLRSIAKKQVDYLVGDNPLKMSYMVGHGPRCEGYTTGDHRLRPLLFTLARSNAQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0628 333 SUPERFAMILY Six-hairpin glycosidases 40 309 IPR008928 GO:0005975
Ssu4g0628 333 Gene3D - 38 319 IPR012341 GO:0005975
Ssu4g0628 333 PANTHER ENDOGLUCANASE 1 68 309 - -
Ssu4g0628 333 PANTHER ENDOGLUCANASE 1 37 70 - -
Ssu4g0628 333 PANTHER ENDO-1,4-BETA-GLUCANASE 68 309 - -
Ssu4g0628 333 PANTHER ENDO-1,4-BETA-GLUCANASE 37 70 - -
Ssu4g0628 333 Pfam Glycosyl hydrolase family 9 67 310 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0628 Ssu-Chr4 9961735 9963630 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0628 40 307 Glycoside Hydrolase AT1G02800 61.180 4.83e-122 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0628 K01179 - gmx:100793900 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0628 4 9961735 9963630 Ssu7g1985 7 39497695 39499939 PCT