Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1977 ATGAAGAGGCTAgtAACTGTGCTTTTACTTATAGTATTAAGCACTGCTCTGGAAGGCAATGGAGAAGATGATCATGGACCATGTAAACAGAAAGCATTGAATCCTAGGCCTCACAGCGTGTCAATCTTAGAGTTTGGGGCAGTTGGAGATGGAAAAACATTGAACACAGTTGCGTTCCAAAATGCAGTTTTTTACGCCAAGTCATTTGCTGACAAAGGTGGTGCTAAACTATATGTTCCATCTGGCAAGTGGCTTACTGGAAGTTTTAACCTTACCAGCCACCTCACTCTCTTCCTTGAAAGAGGCGCAACCATCATTGCATCACAGGATTATGCACACTGGACTGCAGTGGATCCCCTACCCTCCTATGGTCGAGGAATTGATGTTCCAGGTGGGAGATATTGCAGTTTGATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGGAATTATTGATGGCCAGGGTTCTGTTTGGTGGGACCTAATCAGGACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGTTCTGATGATATCATTATCtcaaatttgacatttttaaactCTCCTGCTTGGAGCATCCATCCTGTATATTGCAGCAACGTTCAAATCCGCAAAATAACAGCTCATGCACCAACTGAGTCCCCTTACACAAGTGGTGTAGTTCCAGATTCTTCTGAGTATGTTTGCATTGACAACAGCAATATTAGCACTGGTCATGATGCTATTGTGCTGAAGAGTGGTTGGGATCAATATGGAATTGCCTATGGCAAGCCAACCTCAAATGTCTACATCAGGAGTGTTTATCTACAATCATCATCAGGTGCTGGCCTAGCATTTGGAAGTGAGATGTCTGGAGGTATATCTGATATAATTGCAGAGCAGCTCCATATTATAAACTCGAGTATTGGTGTTGAACTGAAGACAACTAGGGGTAGAGGTGGCTATATGAAAAACATCCTCATTTCTGATGcaaaattggaaaatatttaCTTGGGTATCAGCATGACTGGGTACTCTGGCTCCCATCCAGATGACAAGTATGATCCTAATGCAGTTCCAGGTGTTGGTAATATTACTTTTGAGAATGTGATTGGTGCAAATATTGCTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTGTCTGTCTTTCCAACGTGACTTTTTCTACCAGTTGTGAGTCGTCTCCTTCATGGTTTTGTTCTAATGTAATGGGAACCTCTGAGGAAGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTATTCAAACTTTTCCTCTTGCCTTTCTTCCCTACATCCATCGTCTAGTTATGTCTCAAGCGCATGA 1368 0.4123 MKRLVTVLLLIVLSTALEGNGEDDHGPCKQKALNPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAKLYVPSGKWLTGSFNLTSHLTLFLERGATIIASQDYAHWTAVDPLPSYGRGIDVPGGRYCSLIYGQNLSDVVITGDNGIIDGQGSVWWDLIRTHSLNYSRPHIIELVGSDDIIISNLTFLNSPAWSIHPVYCSNVQIRKITAHAPTESPYTSGVVPDSSEYVCIDNSNISTGHDAIVLKSGWDQYGIAYGKPTSNVYIRSVYLQSSSGAGLAFGSEMSGGISDIIAEQLHIINSSIGVELKTTRGRGGYMKNILISDAKLENIYLGISMTGYSGSHPDDKYDPNAVPGVGNITFENVIGANIAIAGNFSGIVDSPFTPVCLSNVTFSTSCESSPSWFCSNVMGTSEEVFPEPCPDLQNTYSNFSSCLSSLHPSSSYVSSA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1977 455 Pfam Glycosyl hydrolases family 28 137 417 IPR000743 GO:0004650|GO:0005975
Ssu7g1977 455 Gene3D - 27 423 IPR012334 -
Ssu7g1977 455 PANTHER PECTIN LYASE-RELATED 5 446 - -
Ssu7g1977 455 SUPERFAMILY Pectin lyase-like 30 437 IPR011050 -
Ssu7g1977 455 PANTHER POLYGALACTURONASE-RELATED 5 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1977 Ssu-Chr7 39422125 39425478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1977 1 443 Glycoside Hydrolase AT3G16850 60.360 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1977 - - gmx:100801823 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1977 7 39422125 39425478 Ssu7g1977 7 39422125 39425478 ECH
Ssu4g0620 4 9846228 9850013 Ssu7g1977 7 39422125 39425478 PCT