Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0620 ATGCAACTGTTCCTGGACTGGGTTCAGAAGTTTCTTTCCCCATTGCTGTTTCCACTTGTTGCTGCTCAAACACACATGAAGGGGCTAgTGGCAGTGCTTTTACTTGTAGCATTAAGCACTGCTCTGGAAAGCAATGGAGAAGACAATGGTGGACCATGTAAACAGAATGCATTGGATGCTAGGCCTCACAGTGTGTCGATCTTAGAGTTTGGGGCGGTTGGAGATGGAATAACACTGAACACAGTTGCGTTCCAAAATGCAATATTTTATCTCAAGTCATTTGCTGACAAAGGAGGTGCCCAACTATATGTACCATCTGGCAGATGGCTTACTGGGAGTTTTAACCTCACCAGTCACCTCACTCTGTTCCTTGAGAGAGGCGCTACCATCATTGCATCTCAGAATTATTCTCACTGGGATGTAGTGGATTCCCTTCCTTCTTATGGTAGAGGAATTGACGTTCCAGGTGGGAGATATCGCAGCTTGATCTATGGACAGAATTTAAGGGATGTGGTAGTTACAGGTGATAATGGAACTATAGATGGGCAAGGCTCTATCTGGTGGGAGCTGTTCAGTTCTCATTCCTTAAATTACAGTCGACCAAATCTTATAGAATTTGTCGATTCTGTTGACGTCATAATTTCCGATTTGACTTTTTTAGACTCCCCTGCTTGGGACATACATCCAGTATATTGCAGTAatgttcaaattcaaaacataaCTTCTCGTGCACCTGCTGAATCCCCTTACACAAGTGGTATAGTTCCAgATTCTTCTCAGAATGTTTGCATTGAGAACAGTAACATTAGCACTGGCCATGATGCAATTGTGCTGAAAAGTGGTTGGGATCAGTACGGCATTGCCTATGGAAAACCAACCTCGAGTGTCCACATCAGTAATGTTTACCTACAATCAACATCAGGTGCTGGCTTGGCATTTGGGAGTGAGATGTCTGGGGGAATATCAGATATTATAGCAGAGAAGCTTCATATACTCAACTCACCTATTGGCATTGAACTAAAAACAACTAGGGGTAGAGGTGGCTATATGAAAGACATCTTCATTTCTGATGCAGAATTGGACAATATTTACTTGGGAATCAGCATGACAGGATTCTCCGGTTTCCATCCAGATGACATGTATGACACAAGTGCACTTCCAGTTATTGGCAGCATTACTTTTAAGAATGTGATTGGTGCAAATATTAGTGTTGCCGGGAATTTTTCAGGAATAGTTGAATCACCATTCTCAACAATCTGTCTTTCAAACGTGACTTTTTCTCTCAGCTCTGAGTCATCTCCTTCATGGTTCTGTTCTAATGTAATTGGTTTCTCTGAGGAGGTGTTTCCTGAGCCATGTCCTGATCTCCAGAGCTCGGATtccaaGTCAGTGGTCTTGATTCTTCTGCTTTTCCTTTTCCCCGTTGCTAGACAGCTATACTTGACTAAATCTGATGGATTGCGAGTGGCCACCAATAATTCCATCAATGGCAGTTCATTGTCCCACTCCACCCTGGAGCTGGGGAACCTGAAGCAGCTACTTGCATCACTTCAACTTTCTTCCGTACCATCTAATTAA 1578 0.4246 MQLFLDWVQKFLSPLLFPLVAAQTHMKGLVAVLLLVALSTALESNGEDNGGPCKQNALDARPHSVSILEFGAVGDGITLNTVAFQNAIFYLKSFADKGGAQLYVPSGRWLTGSFNLTSHLTLFLERGATIIASQNYSHWDVVDSLPSYGRGIDVPGGRYRSLIYGQNLRDVVVTGDNGTIDGQGSIWWELFSSHSLNYSRPNLIEFVDSVDVIISDLTFLDSPAWDIHPVYCSNVQIQNITSRAPAESPYTSGIVPDSSQNVCIENSNISTGHDAIVLKSGWDQYGIAYGKPTSSVHISNVYLQSTSGAGLAFGSEMSGGISDIIAEKLHILNSPIGIELKTTRGRGGYMKDIFISDAELDNIYLGISMTGFSGFHPDDMYDTSALPVIGSITFKNVIGANISVAGNFSGIVESPFSTICLSNVTFSLSSESSPSWFCSNVIGFSEEVFPEPCPDLQSSDSKSVVLILLLFLFPVARQLYLTKSDGLRVATNNSINGSSLSHSTLELGNLKQLLASLQLSSVPSN 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0620 525 Gene3D - 53 445 IPR012334 -
Ssu4g0620 525 Pfam Glycosyl hydrolases family 28 160 441 IPR000743 GO:0004650|GO:0005975
Ssu4g0620 525 PANTHER POLYGALACTURONASE-RELATED 30 463 - -
Ssu4g0620 525 PANTHER PECTIN LYASE-RELATED 30 463 - -
Ssu4g0620 525 SUPERFAMILY Pectin lyase-like 55 456 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0620 Ssu-Chr4 9846228 9850013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0620 26 461 Glycoside Hydrolase AT3G16850 61.785 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0620 - - gmx:100787190 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0620 4 9846228 9850013 Ssu4g0620 4 9846228 9850013 ECH
Ssu4g0620 4 9846228 9850013 Ssu7g1977 7 39422125 39425478 PCT