Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1950 ATGGCCGCGAGCACTCCCTGTCAGAATGCCACAGAAAAGAAGCACTGGTGGCTCACCAACCGAAAGATGGTCGAGAAATATATCAAAGACGCTCGGAGTCTGATAGCGACTCAGGAACAAAGCGAGATCACTTCGGCGCTGAATCTTCTAGACGCGGCTCTGGCGATCTATCCGCGGCTAGAGCAAGCGCTTGAGCTGAGGGCGCGGTCTCTGCTCTATCTGCGGAGGTTCAAAGACGTAGCGGATATGCTTGAGGACTACATTCCCAGCCCGAGAATGGCAAACGATGACTCCGCTTCCGTTTCTTCGGATGGTTCGTCTCAGCAGCTTTCGAGGGAGGGTGTGAAGCTTCTCTCCTCCTCCGATTCCTCGGGTTCGGATCAGAGTTTCAAGTGCTTCTCTGTCTCTGACTTGAAGAAGAAGGTTATGGCAGGGCTGTGTAGAAGCTGCGACAAGGAAGGGTATTGGagATACTTGGTTCTGGGGAAAGCATGTTGCCACCTAGGCCTAATGGAAGACGCAATGGTCCTTCTCCAAACGGGTAAACGCCTCGCCACCGCCGCGTTCCGCCGCGAGAGCGTGCACTGGTCCGACGACAGCTTCTCCGAGCCCGCCACCCCACCCCCCGGCCCCCCGCTCCCGGAGTCCGAAACCGCGACCCAACTCCTGGCCCACATAAAGCTCCTCCTCCGGCGGCGCGCCGCCGCGCTGGCCGCCGTGGACGCCGGCCTCCACTCGGAGGCCATCCGCCACTTAACGAAAATCCTGGACGGCCGCCGCGGCGCCCCGCAGGGCTTCCTGGCGGAGTGCTACATGCACCGCGCCTCCGCGCAGCGGTCCGCGGGCAGAATCGCGGACTCGATCGCCGACTGCAACAGAGCCCTGGCCCTGGACCCCACCTGCATCCTAGCACTCCACACCCGCGCCTCCCTCCTGGAAACCATTCGGTGCTTCCCGGACTCCCTCCACGACCTCGAACACCTCAAGCTCCTCTACAACACCATCCTGCGCGACCGCAAGCTCGCGGGCCCCGCGTGGAGGCGCCACAGCGTGCGCTACGGGGAAATCCCCGGGAGACTCTGCGCCCTCGCCACCAAGATTCAAGAACTGAAGCACCGGATCGCCTCCGGGGACACCGGCAACGTGGACTACCACGCCTTGATCGGGCTGCGGCGCGGGTGCTGTCGTTCGGAGCTGCAGAGGGCCCATTTGTTGCTTTGTTTGAAGCACAAGCCCGACAAGGCCATGAGCTTCATCGAACGGTGCGAGCTCGCGGACGAGCGCAACCTCGAGTCGGTTAAGGACAGGGCCAGGATGTCGGCGTTGCTGCTCTACAGGCTGCTTCAGAAGGGTTACACCAACGTCATGGGTGTCATCATGAACGAGGAGGCTGCTCAGAAGCAGAGGAAGAAGGTTCTGGAAGCTCAGGTTGAGGCCGAGATATTGGAAAAGAATAAGTGCACCGTTTCGTCTCCTTCCACCGCCAATCCGTCGGTTTTTCAGGGGGTGTTTTGCCGGGATCTTGCGGTGGTTGGGAACTTGCTTTCGCAAGCGGCGTTCAACCGGTCCATTCCTGTGAAGTACGAGGCGTTGAGCTGCTAA 1602 0.6049 MAASTPCQNATEKKHWWLTNRKMVEKYIKDARSLIATQEQSEITSALNLLDAALAIYPRLEQALELRARSLLYLRRFKDVADMLEDYIPSPRMANDDSASVSSDGSSQQLSREGVKLLSSSDSSGSDQSFKCFSVSDLKKKVMAGLCRSCDKEGYWRYLVLGKACCHLGLMEDAMVLLQTGKRLATAAFRRESVHWSDDSFSEPATPPPGPPLPESETATQLLAHIKLLLRRRAAALAAVDAGLHSEAIRHLTKILDGRRGAPQGFLAECYMHRASAQRSAGRIADSIADCNRALALDPTCILALHTRASLLETIRCFPDSLHDLEHLKLLYNTILRDRKLAGPAWRRHSVRYGEIPGRLCALATKIQELKHRIASGDTGNVDYHALIGLRRGCCRSELQRAHLLLCLKHKPDKAMSFIERCELADERNLESVKDRARMSALLLYRLLQKGYTNVMGVIMNEEAAQKQRKKVLEAQVEAEILEKNKCTVSSPSTANPSVFQGVFCRDLAVVGNLLSQAAFNRSIPVKYEALSC 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1950 533 SMART tpr_5 268 301 IPR019734 GO:0005515
Ssu7g1950 533 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 533 - -
Ssu7g1950 533 CDD DnaJ 383 415 IPR001623 -
Ssu7g1950 533 SUPERFAMILY TPR-like 233 327 IPR011990 GO:0005515
Ssu7g1950 533 MobiDBLite consensus disorder prediction 95 128 - -
Ssu7g1950 533 Gene3D Tetratricopeptide repeat domain 205 342 IPR011990 GO:0005515
Ssu7g1950 533 PANTHER - 1 533 - -
Ssu7g1950 533 Coils Coil 465 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1950 Ssu-Chr7 38930622 38933192 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1950 - - gmx:106797171 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1950 7 38930622 38933192 Ssu7g1950 7 38930622 38933192 ECH
Ssu4g0599 4 9621539 9624376 Ssu7g1950 7 38930622 38933192 PCT