Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0599 ATGGCGCTCACTACTCACTCCCTATCTGCCACAGAAAAGAGGCACTGGTGGCTTACCAACCGAAAGATTGTTGAGAAATGCATCAAGGATGCGCGGAGTCTTATGGCGACGCAAGAGCAGAGCGAGATCGCTTCGGCGCTGAACCTTCTAGATGCGGCTCTGGCGATTTCTCCGAGGCTGGATCAAGCGCTTGAGCTGAGAGCGAGGGCGCTGCTCTATTTGCGGCGGTTCAAGGACGTTGCCGATATGCTTCAGGACTACATTCCGAGCCTGAGAATGGGCAACGATGActcctcctcttcttcctctgtTTCTTCCGACACCTCTTCGCAGCAGCTTTCGCGAGAGGGAGTGAAGCTCCTCTCTTCCTCCGACTCGCCGGTGCGGGATCAGAGTTTCAAGTGCTTCTCTGTGTCTGACCTCAAGAAGAAGGTCATGGCAGGGCTGTGTAAAACTTGCGACAAGGAAGGGCAATggagATACTTGGTATTGGGTGAAGCATGTTGCCATCTAGGCCTGATGGAGGATGCAATGGTTCTTCTTCAAACGGGGAAACGGCTCGCCAGCGCAGCATTCCGGCGCGAGAGTGTGTGTTGGTCAGAAGACAGCTTTTCTGTGACAAACATCCCCTTCTCCGGCGACGCGACAAACGCGCCACCCACTACTCCGCCGCGAACCCTTCTGGCGGACTCCGAGAGCGTCGTGACCCAACTCCTCGGCCACATAAAGTTCCTCCTCCGGCGGCGCGCGGCGGCTCTGGCGGCCCTCGACGCGGGGCTCTACTCGGAGGCCGTCCGCCACTTCTCGAAAATCGTGGACGGCCGCCGCAGCGCGCCGCAGAGCTTCCTGGCAGAATGCTACATGCACCGAGCCTCGGCGCACCGTTCCGCAGGCCGAATCGCAGAGTCCATCGCCGACTGCAACCGCACCCTCGCCCTGGACCCCACTTGCATTCAAGCCCTCGAAACCAGGGCCTCGCTCTTCGAAACCATTCGCTGTTTGCCCGACTCTCTGCACGACCTCGAACACCTGAAGCTCCTCTACAATGCAATCCTCCGGGACCGCAAGCTTCCCGGTCCCGCGTGGAAGCGCCACAACGTGCGCTACAGGGAGATTCCGGGGAAACTCTGTGCCCTCACCATTAAAATCCAGGAACTGAAGCAGAGGCTGGCTTCCGGTGAAACCGGGAACGTTGATTACTATGCTTTGATTGGTGTCCGACGAGGTTGTTCGCGCTCGGAGTTGGAGAGGGCCCACTTGTTGTTAACCTTGCGGCACAAGCCTGATAAGGCAACGGGTTTTATTGAACGGTGCGAGCTCGCGGATGAGCGTGATGTTGAGTCGGTTAAGGAGAGGGCTAAGATGTCTGCGCTGTTGTTATACAGATTGGTTCAGAAGGGTTACACTAATGTCATGGGCTGCATCATGGATGAGGAAGCTGCTGAGAAGCAAAGGAAGAAGGCTGCTTTGCAAGCTATTCAAGTACAGAAAGAGAAAGCCACTGAACCTGATGAGTTGAATAAGGGAGAGAGTATTCAGAGTGATAATAGGAGCAGCGTGGAGAATAATAATACTCAAATGTCTCAAAATAGGTCCATGGTATCTTCTTCTACTGTGAATCCTGCGGTGTTCCAGGGTGTTTTCTGCCGCGATCTTACGGTGGTGGGGAACTTGCTTTCTCAGGTGGGGTTTAATCGGTCCATGCCGGTGAAGTATGAGGCGTTGAGCTgttga 1734 0.545 MALTTHSLSATEKRHWWLTNRKIVEKCIKDARSLMATQEQSEIASALNLLDAALAISPRLDQALELRARALLYLRRFKDVADMLQDYIPSLRMGNDDSSSSSSVSSDTSSQQLSREGVKLLSSSDSPVRDQSFKCFSVSDLKKKVMAGLCKTCDKEGQWRYLVLGEACCHLGLMEDAMVLLQTGKRLASAAFRRESVCWSEDSFSVTNIPFSGDATNAPPTTPPRTLLADSESVVTQLLGHIKFLLRRRAAALAALDAGLYSEAVRHFSKIVDGRRSAPQSFLAECYMHRASAHRSAGRIAESIADCNRTLALDPTCIQALETRASLFETIRCLPDSLHDLEHLKLLYNAILRDRKLPGPAWKRHNVRYREIPGKLCALTIKIQELKQRLASGETGNVDYYALIGVRRGCSRSELERAHLLLTLRHKPDKATGFIERCELADERDVESVKERAKMSALLLYRLVQKGYTNVMGCIMDEEAAEKQRKKAALQAIQVQKEKATEPDELNKGESIQSDNRSSVENNNTQMSQNRSMVSSSTVNPAVFQGVFCRDLTVVGNLLSQVGFNRSMPVKYEALSC 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0599 577 MobiDBLite consensus disorder prediction 496 534 - -
Ssu4g0599 577 SUPERFAMILY Chaperone J-domain 395 433 IPR036869 -
Ssu4g0599 577 SUPERFAMILY TPR-like 250 344 IPR011990 GO:0005515
Ssu4g0599 577 MobiDBLite consensus disorder prediction 512 534 - -
Ssu4g0599 577 Gene3D Tetratricopeptide repeat domain 31 507 IPR011990 GO:0005515
Ssu4g0599 577 PANTHER - 3 577 - -
Ssu4g0599 577 Coils Coil 476 498 - -
Ssu4g0599 577 SMART dnaj_3 398 480 IPR001623 -
Ssu4g0599 577 SMART tpr_5 284 317 IPR019734 GO:0005515
Ssu4g0599 577 MobiDBLite consensus disorder prediction 94 128 - -
Ssu4g0599 577 CDD DnaJ 399 433 IPR001623 -
Ssu4g0599 577 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 3 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0599 Ssu-Chr4 9621539 9624376 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0599 - - gmx:100808420 981.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0599 4 9621539 9624376 Ssu4g0599 4 9621539 9624376 ECH
Ssu4g0599 4 9621539 9624376 Ssu7g1950 7 38930622 38933192 PCT