Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1949 ATGGCTTCCATTTTCTCACCCCTCACCACTATTTTCCTCCTTCTCCCCCTCTTCTGGGGTGGCGAGGCACGTGACCCTTTTGCGTGTGACCCAAAGAACGCCGCCACAACGAGCTTACCGTTTTGCAAGGTGTCGTTGCCAATAGCAGCAAGGGTGAAGGATCTCATTGGAAGGTTGACATTGCAAGAAAAGGCTAACTTGCTAGTGAACAATGCCGCGGCAGTTCCACGGCTTGGTATCAAAGGGTATGAGTGGTGGTCGGAGGCACTCCATGGGGTTTCAAATGTGGGTCCAGGAACCAAGTTTGGTGGCCAATTCCCTGCCGCCACTAGCTTCCCACAAGTCATCACTACCGCTGCTTCTTTCAATGCGTCTTTGTGGGAAGCAATCGGACGGGTTGCCTCGGACGAAGCAAGAGCAATGTACAATGGAGGAACGGCTGGGCTGACATACTGGAGCCCAAACGTGAACATTTTTAGAGACCCACGGTGGGGCCGCGGACAGGAGACTCCCGGTGAGGACCCAATACTAGCCGGTAGATATGCTGCCAGTTACGTGAGGGGACTACAGGGAACGGACGGTAACCGGTTGAAGGTGGCTGCCTCTTGCAAACACTTTACGGCTTATGACCTTGATAATTGGAACGGTGTGGATCGCTTTCACTTTAATGCACAGGTTAGCAAGCAGGACATTGAAGACACGTTCAACGTACCATTCAGGATGTGTGTGAAGGAAGGCAAAGTGGCGAGTGTAATGTGTTCTTACAATCAGGTTAACGGTGTTCCCACCTGTGCGGACCCCAACCTCCTAAAGAGAACAGTTCGTGGCCAATGGGGTCTTGATGGGTACATTGTATCAGACTGTGACTCTGTTGGGGTCTTTTACACTAGCCAACATTACACATCTACGCCAGAAGAAGCTGCTGCCGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGGCCTTTTCTAGGACAGCATACGCAGAATGCCGTGAAAAAAGGCCTGTTAAGCGAAGCTGATGTGAATGGGGCTTTAGCGAACACATTAACAGTCCAAATGAGGTTAGGGATGTATGATGGTGAGCCATCAGGTCATCCATATGGGAACCTTGGTCCAAGAGATGTGTGCACCCCAAGTCACCAAGAGCTCGCCCTTGAAGCCGCAAGACAAGGGCTTGTCCTTCTTAAAAACCACCGTCCTTCTTTGCCTCTCTCCAAAAGGCATCACCGTACCGTGGCTGTTATTGGGCCTAATTCTAATGTCACTGTCACAATGATCGGCAACTATGCTGGTATTGCTTGTGGATACACAAGCCCCTTACAAGGAATAGGGAGATACGCCAGGACTATTCACGAGCTCGGTTGTGCAAATGTGGCTTGTACTGATGACAAGCAATTCGGGAGAGCCATAAATGCAGCCCAACAAGCAGATGCAACGGTGCTAGTGATGGGCCTGGACCAGTCCATTGAGGCTGAAACCGTGGACAGGGCTGGCCTGCTTCTTCCAGGGCGTCAACAGGACCTTGTGTCCAAAGTAGCAGCTGCCTCGAAGGGCCCAACAATTTTGGTCACAATGTCTGGTGGGCCCGTGGATATAACTTTCGCAAAGAATGATCCTCGAATCCAAGGCATCTTGTGGGCCGGTTATCCCGGACAAGCTGGTGGTGCCGCCATTGCAGATATCTTGTTTGGAACCGCAATCCCCGgaGGCAAGTTGCCTATGACATGGTACCCACAAGGGTACATTCGAAACTTGCCAATGACAAATATGGCAATGCTACCAAGCCGATCCACAGGGTACCCAGGAAGAACCTATCGATTTTACAATGGCCCCGTGGTGTATCCATTTGGTTACGGATTGTCTTACACACGCTTTGTTCACACATTAGCTAGTGCGCCTAAAGTGGTCTCGATTCCCGTGGATGGGCACCGCCACGGCAATAGCACCAACATCGGAAACAAGGCAATTAAAGTGACACATGCACGATGTGGCAAGCTTTCCATTAGCCTTCACGTGGACGTTAAAAATGTTGGCTCCAAAGATGGCACTCACACGTTGTTAGTGTTCTCAGCACCACCTGCAGGTAATGGCCACTGGGCACCACACAAGCAACTAGTGGCCTTTGAGAAAGTCCACGTTCCTGCCAAGGCTCTACAGCGAGTGCGTGTCAACATTCATGTTTGTAAGCTCCTGAGTGTGGTTGACAGGTCCGGGACTAGGAGAATTCCGATGGGGTTGCACAGTATTCACATTGGTGATGTTAAACACTCCGTATCACTTCAGGCAGAAACACTTGGAATTATCAAGTCCTGA 2316 0.506 MASIFSPLTTIFLLLPLFWGGEARDPFACDPKNAATTSLPFCKVSLPIAARVKDLIGRLTLQEKANLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEAIGRVASDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGRYAASYVRGLQGTDGNRLKVAASCKHFTAYDLDNWNGVDRFHFNAQVSKQDIEDTFNVPFRMCVKEGKVASVMCSYNQVNGVPTCADPNLLKRTVRGQWGLDGYIVSDCDSVGVFYTSQHYTSTPEEAAADAIKAGLDLDCGPFLGQHTQNAVKKGLLSEADVNGALANTLTVQMRLGMYDGEPSGHPYGNLGPRDVCTPSHQELALEAARQGLVLLKNHRPSLPLSKRHHRTVAVIGPNSNVTVTMIGNYAGIACGYTSPLQGIGRYARTIHELGCANVACTDDKQFGRAINAAQQADATVLVMGLDQSIEAETVDRAGLLLPGRQQDLVSKVAAASKGPTILVTMSGGPVDITFAKNDPRIQGILWAGYPGQAGGAAIADILFGTAIPGGKLPMTWYPQGYIRNLPMTNMAMLPSRSTGYPGRTYRFYNGPVVYPFGYGLSYTRFVHTLASAPKVVSIPVDGHRHGNSTNIGNKAIKVTHARCGKLSISLHVDVKNVGSKDGTHTLLVFSAPPAGNGHWAPHKQLVAFEKVHVPAKALQRVRVNIHVCKLLSVVDRSGTRRIPMGLHSIHIGDVKHSVSLQAETLGIIKS 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1949 771 Pfam Glycosyl hydrolase family 3 N terminal domain 105 349 IPR001764 GO:0004553|GO:0005975
Ssu7g1949 771 Pfam Fibronectin type III-like domain 687 754 IPR026891 -
Ssu7g1949 771 SMART Fn3_like_2 685 756 IPR026891 -
Ssu7g1949 771 SUPERFAMILY (Trans)glycosidases 39 392 IPR017853 -
Ssu7g1949 771 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 393 626 IPR036881 GO:0004553|GO:0005975
Ssu7g1949 771 Gene3D Immunoglobulins 648 768 IPR013783 -
Ssu7g1949 771 Gene3D - 378 624 IPR036881 GO:0004553|GO:0005975
Ssu7g1949 771 Gene3D - 51 365 IPR036962 GO:0004553|GO:0005975
Ssu7g1949 771 PRINTS Glycosyl hydrolase family 3 signature 112 131 IPR001764 GO:0004553|GO:0005975
Ssu7g1949 771 PRINTS Glycosyl hydrolase family 3 signature 273 291 IPR001764 GO:0004553|GO:0005975
Ssu7g1949 771 PRINTS Glycosyl hydrolase family 3 signature 199 215 IPR001764 GO:0004553|GO:0005975
Ssu7g1949 771 PANTHER SUGAR HYDROLASE-RELATED 3 767 IPR044993 GO:0009044|GO:0045493
Ssu7g1949 771 Pfam Glycosyl hydrolase family 3 C-terminal domain 393 623 IPR002772 GO:0004553|GO:0005975
Ssu7g1949 771 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 3 767 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1949 Ssu-Chr7 38910390 38917152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1949 5 771 Glycoside Hydrolase AT1G02640 73.794 0.0 1183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1949 - - gmx:100798630 1443.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1949 7 38910390 38917152 Ssu7g1949 7 38910390 38917152 ECH
Ssu4g0598 4 9576341 9584170 Ssu7g1949 7 38910390 38917152 PCT