Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0598 ATGTCTTCCACCTTCTCACCCCACGTTGCCGTTTtgttcctcctcctcctcttggGGGTGGTCCGGCACACGAGCGAGGCACGTGACCCATTCGCGTGCGACCCAAAAGATGGCACCACGAAGAACATGCCGTTTTGCAAGGTGTCGCTGGCGATACCGGAGAGGGTGAAGGACCTCATTGGAAGGTTGACCCTGCAAGAGAAGGTTAGGCTTCTAGTGAACAATGCCGCGGCGGTTCCGAGGCTTGGGATCAAAGGGTACGAGTGGTGGTCTGAGGCACTCCATGGGGTTTCAAATGTGGGTCCCGGAACCAAGTTTAACGCCCAGTTCCCTGGCGCTACTAGCTTCCCTCAAGTCATCACTACCGCTGCTTCCTTCAATGCATCTCTGTGGGAAGCAATTGGACAGGTTGTGTCGGATGAGGCACGGGCCATGTACAACGGTGGAACAGCGGGGCTCACGTATTGGAGCCCAAACGTGAACATTTTCCGGGACCCAAGGTGGGGCCGTGGACAGGAAACTCCCGGTGAGGACCCTGTGCTAGCAGGTAGATATGCTGCTAGTTATGTTAGAGGGCTACAGGGAACGGACGGTAACCGGTTGAAGGTTGCTGCTTGTTGCAAACACTTCACGGCTTATGACCTCGATAATTGGAACGGCGTGGATCGCTTCCACTTTAATGCACAGGTGAGTAAGCAGGACATAGAGGATACTTTCGACGTGCCATTCAGGATGTGTGTGAGCGAAGGCAAAGTAGCAAGTGTGATGTGTTCTTACAATCAAGTCAATGGGGTCCCTACCTGTGCGGACCCCAACCTCCTAAAGAAAACAGTTCGTGGGCTGTGGCATCTTGATGGGTACATAGTATCAGACTGTGATTCTGTTGGGGTGTTTTATGGTAATCAACATTATACATCAACGCCAGAAGAATCTGCTGCCGATGCCATTAAAGCAGGTTTGGATTTAGACTGTGGGCCTTTCCTAGCTGTGCATACGCAGGATGCGGTCAAAAAAGGCTTGCTAAGCGAAGCTGATGTGAATGGTGCTTTGGTGAATACACTGACTGTCCAAATGAGGTTAGGGATGTTTGATGGAGAGCCATCGGCCCATGCATATGGCAACTTGGGCCCAAAAGATGTGTGCAAACCGGCCCATCAAGAGCTAGCTCTTGAAGCTGCCAGACAAGGAATTGTGCTTCTTAAGAACACTGGTCCTGTTTTGCCCCTCTCCTCACAGCGTCATCATACCGTGGCTGTCATTGGGCCCAATTCTAATGCCACTGTTACAATGATTGGAAATTATGCTGGTATTGCTTGTGGATATACCAGCCCCTTGCAAGGAATAGGAAGATATGCCCGGACTATTCATCAGTTGGGTTGTGAAAATATAGCTTGTAATAATGACAAGCTGTTTGGGCCTGCCATAAATGCAGCCCGTCAAGCAGATGCAACCGTTCTAGTGATGGGCTTGGACCAGTCCATTGAAGCTGAAACGGTGGACAGGGCTGGCTTGCTTTTGCCTGGGCGTCAACAAGACCTTGTTTCAAAAGTGGCAGCAGCCTCAAAGGGACCAACCATTTTGGTCTTAATGTCTGGTGGGCCTGTGGACATTACTTTTGCAAAGAATGACCCTCGAGTTGTTGGCATCTTGTGGGCCGGTTATCCGGGCCAAGCCGGTGGTGCTGCCATCGCAGATACACTGTTTGGAACGGCTAACCCAGGGGGCAAGCTGCCTGTGACATGGTACCCAGAAGAATACCTAACAAAGTTGCCAATGACAAATATGGCAATGCGAGCAAGCAAATCAGCAGGGTACCCAGGAAGAACGTATCGGTTCTACAATGGTCGAGTGGTGTATCCATTTGGACACGGGTTGACATACACCCACTTTGTTCATACATTAGCAAGTGCTCCCACAGTGGTGTCAGTTCCCGTGAATGGCCACCGCCGTGCCAATGTCACCAATTTTTCAAACAGGGCAATTAGAGTGACACATACACGATGTGGCAAACTCTCCATCACCCTCCAGGTGGACGTTAAAAATGTGGGGTCCAGAGATGGCACTCACACGTTGCTAGTGTTCTCTGCTCCGCCTGCGGGTGGTGGCCAGTGGGCACTAGAGAAGCAACTGGTGGCCTTTGAGAAGGTCCATGTTCCTGCCAAGGGTCAACAGAGAGTGGGGGTCAATATTCACGTGTGCAAACTCCTAAGTGTAGTGGATAGGTCTGGGATTAGGAGAATCCCACTCGGGGAACACAGTCTTCACATTGGCGATGTTAAACACTCCGTGTCACTTCAAGCTGCAGCACTTGGGATTATCAAGTCCTGA 2328 0.506 MSSTFSPHVAVLFLLLLLGVVRHTSEARDPFACDPKDGTTKNMPFCKVSLAIPERVKDLIGRLTLQEKVRLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFNAQFPGATSFPQVITTAASFNASLWEAIGQVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGRYAASYVRGLQGTDGNRLKVAACCKHFTAYDLDNWNGVDRFHFNAQVSKQDIEDTFDVPFRMCVSEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGLWHLDGYIVSDCDSVGVFYGNQHYTSTPEESAADAIKAGLDLDCGPFLAVHTQDAVKKGLLSEADVNGALVNTLTVQMRLGMFDGEPSAHAYGNLGPKDVCKPAHQELALEAARQGIVLLKNTGPVLPLSSQRHHTVAVIGPNSNATVTMIGNYAGIACGYTSPLQGIGRYARTIHQLGCENIACNNDKLFGPAINAARQADATVLVMGLDQSIEAETVDRAGLLLPGRQQDLVSKVAAASKGPTILVLMSGGPVDITFAKNDPRVVGILWAGYPGQAGGAAIADTLFGTANPGGKLPVTWYPEEYLTKLPMTNMAMRASKSAGYPGRTYRFYNGRVVYPFGHGLTYTHFVHTLASAPTVVSVPVNGHRRANVTNFSNRAIRVTHTRCGKLSITLQVDVKNVGSRDGTHTLLVFSAPPAGGGQWALEKQLVAFEKVHVPAKGQQRVGVNIHVCKLLSVVDRSGIRRIPLGEHSLHIGDVKHSVSLQAAALGIIKS 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0598 775 PRINTS Glycosyl hydrolase family 3 signature 116 135 IPR001764 GO:0004553|GO:0005975
Ssu4g0598 775 PRINTS Glycosyl hydrolase family 3 signature 277 295 IPR001764 GO:0004553|GO:0005975
Ssu4g0598 775 PRINTS Glycosyl hydrolase family 3 signature 203 219 IPR001764 GO:0004553|GO:0005975
Ssu4g0598 775 Pfam Glycosyl hydrolase family 3 C-terminal domain 397 627 IPR002772 GO:0004553|GO:0005975
Ssu4g0598 775 SUPERFAMILY (Trans)glycosidases 43 396 IPR017853 -
Ssu4g0598 775 Gene3D - 55 372 IPR036962 GO:0004553|GO:0005975
Ssu4g0598 775 SMART Fn3_like_2 689 760 IPR026891 -
Ssu4g0598 775 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 397 630 IPR036881 GO:0004553|GO:0005975
Ssu4g0598 775 Pfam Glycosyl hydrolase family 3 N terminal domain 110 352 IPR001764 GO:0004553|GO:0005975
Ssu4g0598 775 Gene3D - 383 628 IPR036881 GO:0004553|GO:0005975
Ssu4g0598 775 Pfam Fibronectin type III-like domain 691 758 IPR026891 -
Ssu4g0598 775 Gene3D Immunoglobulins 652 771 IPR013783 -
Ssu4g0598 775 PANTHER SUGAR HYDROLASE-RELATED 4 770 IPR044993 GO:0009044|GO:0045493
Ssu4g0598 775 PANTHER ALPHA-L-ARABINOFURANOSIDASE/BETA-D-XYLOSIDASE 4 770 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0598 Ssu-Chr4 9576341 9584170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0598 9 775 Glycoside Hydrolase AT1G02640 73.272 0.0 1172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0598 - - gmx:100789316 1466.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0598 4 9576341 9584170 Ssu4g0598 4 9576341 9584170 ECH
Ssu4g0598 4 9576341 9584170 Ssu7g1949 7 38910390 38917152 PCT