Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1943 ATGGTCGTTTCAGACTCATTTCCCAGATCGGAGGGAGGAGCGAGTTGGCTTGACACGGCAGCGGAAAACgagaagagaaagggaaaaatgGGGGCAGATGAAGTTCCAATGGACGACAAGGCAAAGAGGATGAGAGATCTGCTATCGAGTTTCTACTCCCCAGACCCTTCCATGTCCAACACCACCTCCAAACACGCTTCCCTCGATGACATCAATTCTACCTCCTTCGATCCCGATCAGTACATGAATATCCTGGCACTCAAGTCCAATTTGGAAGGGCTGCTCCAACGGCACGTTGAAATGGCAGCTGAAATCAAGAATCTCGACACTGACTTGCAAATGCTAGTCTACGAGAATTACAATAAGTTCATCAGTGCTACAGACACTATAAAGAGGATGAAAAGTAACATTTCAGGGATGGAGGCGAATATGGAACAGCTTCTTGAGAAGATAATGTCtgtgcagtcaagaagtgacaGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTGCATCGGACTTGTAACCTTCTTCGTAAAGTTCAGACTAACATTGAAAGAACTTTTGTTCGagGAGTTATCTGGAATGACGTGCTCCTGATAGATGAAGTCTTACAGGAAGCAGCTCTCTCTAATCACTCTCTTGAGGTTATCCATTCCCTCTTACAAATCCTGAAAAAGGATGAAGCAGAACAGTGCTCTCTTGACGTTGTTCTTGATGCTAGCACAAAAGCAGTTCTGCAAGGAGGCATGAATGTCTTGCTGTACATAAATATTAGAACTCAGAGGGTATCACTTCTCCTGAAGAAGAGGTTTACCACCCCTAATTGGGTTAAGCATAAGGAGCCAAGGGAAGTTCATatgtttgttgatttatttcttCAAGAGCTTGAAGTCATAGTTAACGAAGTGAAGCAGATTTTGCCTCAAGGTAGACGTAAGCACCACAGGACTGATAGTAATGGAAGTACGGCTTCATCAAGGAGCAACCCCTTACGGGATGAAAAACTAGGTAGGTCAAATACTCAAAGGGCAAGGAGCCAGCTTTTGGAAACGCATTTAGCAAAATTGTTTAAGCAGAAAGTTGAAATTTTCACGAAAGTAGAATATACACAGGAGTCTGTTGTTACAACTATAGTTAAGTTGTGCCTTAAAAGTTTACAAGAATTTGTCCGACTCCAGACTTTCAACCGAAGTGGATTCCAGCAAATTCAATTGGATATCCAGTTCCTAAGGATCCCTTTAAGGGAAATAGTTGAAGATGAAGCTGCAATCGACTTCTTGCTAGATGAGGTGATTGTTGCTACTGCAGAACGGTGTCTAGATCCGATTCCATTGGAGCCTCCCATATTGGACAAACTTATACGAGCAAAGTTGGCTAAAACAGAGGAGCAAAATACAATTTCTTCATAA 1425 0.4091 MVVSDSFPRSEGGASWLDTAAENEKRKGKMGADEVPMDDKAKRMRDLLSSFYSPDPSMSNTTSKHASLDDINSTSFDPDQYMNILALKSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISATDTIKRMKSNISGMEANMEQLLEKIMSVQSRSDSVNTSLFDKREHIEKLHRTCNLLRKVQTNIERTFVRGVIWNDVLLIDEVLQEAALSNHSLEVIHSLLQILKKDEAEQCSLDVVLDASTKAVLQGGMNVLLYINIRTQRVSLLLKKRFTTPNWVKHKEPREVHMFVDLFLQELEVIVNEVKQILPQGRRKHHRTDSNGSTASSRSNPLRDEKLGRSNTQRARSQLLETHLAKLFKQKVEIFTKVEYTQESVVTTIVKLCLKSLQEFVRLQTFNRSGFQQIQLDIQFLRIPLREIVEDEAAIDFLLDEVIVATAERCLDPIPLEPPILDKLIRAKLAKTEEQNTISS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1943 474 PANTHER UNCHARACTERIZED 30 187 IPR014812 -
Ssu7g1943 474 PANTHER UNCHARACTERIZED 258 435 IPR014812 -
Ssu7g1943 474 MobiDBLite consensus disorder prediction 315 345 - -
Ssu7g1943 474 Coils Coil 130 157 - -
Ssu7g1943 474 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 30 187 - -
Ssu7g1943 474 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 258 435 - -
Ssu7g1943 474 MobiDBLite consensus disorder prediction 20 39 - -
Ssu7g1943 474 MobiDBLite consensus disorder prediction 1 39 - -
Ssu7g1943 474 Pfam Vps51/Vps67 71 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1943 Ssu-Chr7 38784088 38792012 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1943 K20296 - gmx:100779149 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1943 7 38784088 38792012 Ssu7g1943 7 38784088 38792012 ECH
Ssu4g0586 4 9409397 9417059 Ssu7g1943 7 38784088 38792012 PCT