Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0586 ATGGACACCGACGAGACACCATTGGACGACAAAgcaaagagaatgagagatCTGCTAGCCAGTTTCTACTCTCCAATCCCTTCAGCCTCCTCCAACCCCTTTTCCAAACACTCCTCACGCGACGACATCAATTCCGCCTCCTTCCAACCTGATCAGTACATGAATATCCTGGCGCGTAAGTCGAATTTGGAAGGTCTACTCCAGAGGCACGTTCAAATGGTAGCTGAAATAAAGAATCTAGACACCGACTTGCAAATGCTCGTCTACGAGAATTACAACAAGTTTATCTGCGCTACGGATACTATAAAGAGAATGAAGAGTAATATTTTGGGGATGGAGGCAAACATGGAACAGCTTCTTGAGAAGATAATGTCTGTACAGTCAAGGAGTGACAGTGTTAACACTTCTCTATGTGAAAATAGGGAGCACATAGAGAAAATGCATCGGACATGCAATCTTCTTCGAAAAATTCAGGCATATGGAGATTCATCATTCCAAGATTGTAAACGAGCATCAGAAGAAGCAATAGCTATCATAGTAAAAAACTTGCAGGTGGACAATTTGAAGGCAAAGCTACTAGAGAAGTTGGAGCTTTCCCTTACAGACATTCAGTTTATCCCTGAAGTAATGGAGAATGCTTCTCCCTCTGCTCACGAGGTTTTGCACATTGGTCAAGAAAATTACctcttaaaagtactaaaacGGGATGGAGCAGAGGAGTACTCACTGGAACTTGCCCTAGATGCTAGCATGAAAGTGGTTTTCAACGGAGGCAGGAATGTTTTGTTGtacataAATATGAGAAGTCAGCGAATATCACTTCTCCTAAAGAAGAGGTTTGCCACACCTAATTGGGTCAAGCATAAGGAGCCAAGAGAAGTTCATatgtttgttgatttatttcttCAAGAGCTCAAAATTACAGGTAATGAAGTGAAGCAGATTTTGCCTCAAGATAAGCAAAAGCACCGTAGGGCTGATAGTAATGGAAGTACTGCTTCATCAAGAAGCAACTCTTTCCGGGATGAGAAGTTGAGTCGCTCTAATATTCAAAAGGGAAGGAGCCAACAGCTTTTGGAAACACATCTAGCAAAACTGTTTAAgcaaaaagttgaaattttcaCAAAAGTAGAATATACACAGGAATCAGTCGTTATGACCACTGTTAAATTGTGCCTTAAAAGTTTACAAGAATTTGTTCGGCTCCAGACTTTTAACCGGAGTGGATTCCAGCAAATTCAGTTGGATATTCAGTTCTTGAGGACTCcattaaaagaaatagttgaAGATGAGGCTGCAATGGACTTCTTGCTAGATGAGGTGATTGTTGCTGCTGTAGAGCGATGCCTTGATCCAATTCCACTGGAGCCCCCCATATTGGACAAACTTATACAAGCAAAGCTGGCAAAACATAAGGAACATGATATAATCTCTTCATAA 1440 0.3924 MDTDETPLDDKAKRMRDLLASFYSPIPSASSNPFSKHSSRDDINSASFQPDQYMNILARKSNLEGLLQRHVQMVAEIKNLDTDLQMLVYENYNKFICATDTIKRMKSNILGMEANMEQLLEKIMSVQSRSDSVNTSLCENREHIEKMHRTCNLLRKIQAYGDSSFQDCKRASEEAIAIIVKNLQVDNLKAKLLEKLELSLTDIQFIPEVMENASPSAHEVLHIGQENYLLKVLKRDGAEEYSLELALDASMKVVFNGGRNVLLYINMRSQRISLLLKKRFATPNWVKHKEPREVHMFVDLFLQELKITGNEVKQILPQDKQKHRRADSNGSTASSRSNSFRDEKLSRSNIQKGRSQQLLETHLAKLFKQKVEIFTKVEYTQESVVMTTVKLCLKSLQEFVRLQTFNRSGFQQIQLDIQFLRTPLKEIVEDEAAMDFLLDEVIVAAVERCLDPIPLEPPILDKLIQAKLAKHKEHDIISS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0586 479 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 1 158 - -
Ssu4g0586 479 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 158 185 - -
Ssu4g0586 479 PANTHER LOW QUALITY PROTEIN: VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 51 HOMOLOG 259 440 - -
Ssu4g0586 479 Coils Coil 102 129 - -
Ssu4g0586 479 MobiDBLite consensus disorder prediction 24 45 - -
Ssu4g0586 479 MobiDBLite consensus disorder prediction 316 349 - -
Ssu4g0586 479 Pfam Vps51/Vps67 43 128 - -
Ssu4g0586 479 PANTHER UNCHARACTERIZED 1 158 IPR014812 -
Ssu4g0586 479 PANTHER UNCHARACTERIZED 158 185 IPR014812 -
Ssu4g0586 479 PANTHER UNCHARACTERIZED 259 440 IPR014812 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0586 Ssu-Chr4 9409397 9417059 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0586 K20296 - zju:107406057 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0586 4 9409397 9417059 Ssu7g1943 7 38784088 38792012 PCT