Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1930 ATGAATTACGCCCGTCTGATTACCGGCGGAGGATGGCTGCTCCGGCGAATGTGCACGGCGGCTGAGACTCCGGCGAAAAAGCCAAACCTCTATCGAATGTTATCGGCGCTGGACATGACCGGAGGTAGCGCGTCGCAAACGTTGGACCACTATATAATGCAAGGCAAAGCCGTCAGAAAATCAGAACTCGAAAGATGCGTAGAGGAGCTCCGAAAGTATAACAAATTCCAGCACGCACTCGAGATAATGGAATGGATGGAGATGAGGAAAATTAACTTTTCCTGGAATAACTATGCAGTGCAATTAGATCTTGTGTCCAAAACCAAAGGGGTGGTTGCAGCTGAGAATTTTTTCAGCGCTCTTCCTCCTCCAGCCAAGAACAAGTATACCTACGGTGCTCTTTTGAACTGTTATTGCAAGGAGCTAATGACAGACAAGGCATTGCGACATTTTGATAGAATGGATGAATTAGGTTATGTCACTTCTCTGGCTTTCAACAATCTGATGAGTATGTTTATGAGACTGGGTCAACCCCAGAAAGTGCCTCAGCTAGTGGGGCTAATGAAGCAGAAGAACATTCCCTTGTCTGCATTCACATATCATGTCTGGATGAACAGCTGCGCCACTTTGAACGATCTTGATGGGGCGGAGAGAGTCTATGAGGAGATGAAAACTGAAGATGAGGACAAAATTGGTTGGCAGACTTACAGCAACCTTGCTGCTATTTATGCAAAGGTTAAGGACTTTGAGAAGGCTGAGATGATGCTTAAGATGCTGGAAAAGGAAGTGAAGCCGCGGCAGCGCGATGCTTACCATTGCTTGCTTGGCCTCTATGCAGGGACTGGTAATCTTGGAGAGGTTCATAGACTGTGGAATTCCCTCAAGTCTGTCTCCCCTGTGACCAATTACAGCTATCTTGTTATGCTTAGTACACTCCGAAGGCTTAATGATATGGAGGGCATAGCAAAATGCTTGAAGGAGTGGGAGTCTAGTTGTGTTAGTTATGATGTGAGGTTGGTCAATGTTTGTGTTAGTGCTTACTTGAGTCAGAACATGGTGGAAGAAGCTGCATTGGTGTTTGAGGAGGCTAGCAGAAGGAGCAAAGGGCCTTTGTTTAGGATTCGGGAATTGTTCATGATGTATTTCTTGGAGAAACGTCAGTTGGATGCTGCTGTGAGGCACTTGGAGGCGGCGCTTTCAGAAGTCAAGGGTAATGAACGCCGTCCTTCACCAAAAGTTGTTGGGGCTTTTCTGAAGTACTATGAAGAAGAGACGGATGTTGATGGTGTCGATGAGTTGAGCAAGATTTTCAAGGCTAACAATTTTGATGATTCCTGGATTAAAACTTGCATTACTGCATCCGAATCATCTCCTGAAATTGATCCAAGATTGAAGAAAGATTCTCAAGTCTACCAGGCGCAGGAAAACTAG 1431 0.4556 MNYARLITGGGWLLRRMCTAAETPAKKPNLYRMLSALDMTGGSASQTLDHYIMQGKAVRKSELERCVEELRKYNKFQHALEIMEWMEMRKINFSWNNYAVQLDLVSKTKGVVAAENFFSALPPPAKNKYTYGALLNCYCKELMTDKALRHFDRMDELGYVTSLAFNNLMSMFMRLGQPQKVPQLVGLMKQKNIPLSAFTYHVWMNSCATLNDLDGAERVYEEMKTEDEDKIGWQTYSNLAAIYAKVKDFEKAEMMLKMLEKEVKPRQRDAYHCLLGLYAGTGNLGEVHRLWNSLKSVSPVTNYSYLVMLSTLRRLNDMEGIAKCLKEWESSCVSYDVRLVNVCVSAYLSQNMVEEAALVFEEASRRSKGPLFRIRELFMMYFLEKRQLDAAVRHLEAALSEVKGNERRPSPKVVGAFLKYYEEETDVDGVDELSKIFKANNFDDSWIKTCITASESSPEIDPRLKKDSQVYQAQEN 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1930 476 Coils Coil 385 405 - -
Ssu7g1930 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 196 230 IPR002885 -
Ssu7g1930 476 PANTHER OS01G0301500 PROTEIN 3 470 - -
Ssu7g1930 476 SUPERFAMILY TPR-like 122 270 IPR011990 GO:0005515
Ssu7g1930 476 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Ssu7g1930 476 Gene3D Tetratricopeptide repeat domain 44 164 IPR011990 GO:0005515
Ssu7g1930 476 MobiDBLite consensus disorder prediction 455 476 - -
Ssu7g1930 476 Pfam PPR repeat 164 193 IPR002885 -
Ssu7g1930 476 Pfam PPR repeat 129 158 IPR002885 -
Ssu7g1930 476 Pfam PPR repeat 235 261 IPR002885 -
Ssu7g1930 476 Pfam PPR repeat 198 226 IPR002885 -
Ssu7g1930 476 TIGRFAM PPR: pentatricopeptide repeat domain 198 226 IPR002885 -
Ssu7g1930 476 TIGRFAM PPR: pentatricopeptide repeat domain 129 160 IPR002885 -
Ssu7g1930 476 PANTHER OS12G0527900 PROTEIN 3 470 - -
Ssu7g1930 476 SUPERFAMILY TPR-like 196 306 IPR011990 GO:0005515
Ssu7g1930 476 Gene3D Tetratricopeptide repeat domain 181 299 IPR011990 GO:0005515
Ssu7g1930 476 Gene3D Tetratricopeptide repeat domain 300 451 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1930 Ssu-Chr7 38654886 38656416 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1930 30 476 EF-hand Containing Proteins AT1G02150 32.456 5.74e-75 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1930 - - gmx:100781679 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1930 7 38654886 38656416 Ssu7g1930 7 38654886 38656416 ECH
Ssu7g1930 7 38654886 38656416 Ssu4g0827 4 12990853 12991851 PCT