Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0827 ATGACTTGCACCGATAATACGGCCACCGGCGACGAAGCGACCGGCGCCACCACCATCTCCGCCGTGCATCCGGACGTAATCCAAACCCACATCCTCACGTGCCTCGACGGCCCCGCACTCGCCTCGGTCGCCAGCACGTGCTCCCAACTCCACGCGCTCTCCGCGCAAGAGCCACTCTGGGCCGAGATATGCCGCTCCACGTGGCCCTCCACGAACGCGCCACGCGTCCGCCACGTCATCTCGACCTTCCCACGCGCGTCGCGCTCTTTTTTCTCCGACTCGTTCCCTCCCTTCGCCGCGCGCGGTTCGCGCCCCGCGGGCATCGAGCGCGCGCTGGAGCTGATCTCCTCGGTGGACCTCTTCCACGGGCGGCGGGCGGTGCTGTCGCGGGTGGTGGAGACGGAGACGGAGTCCGGGTGGTTCCGGTGCTCGCCGTTTAGGGTTGATGTTTTGGATCCGAAGGACGCGGTGGCGACGGCGGTGGAGTACCCGAAGAGCGAGGAAGCGTGTGAGGGGCTCGGGGAGGAGTTCAGGCTGAGTTGGATTGTGGTGGACCCGAAGGGGCGGCGCGCGGTGAACGTGTCGAGCGGGAGGGCGGTGTCGGTGGAGCGGCACTGGCTGAGCGGGGAGGTGAGGGTGCGGTTCGCGACAGTGGTGGGCGGCGGGGAGAGGGGGTCGGCGTCGGAGGAGGCGCTGTGCAGCGTGACGGTGACGTTCGGGGGGGAGATGCAGGTGAGGGAAGCGTGTCTGCAGATGGAGGACATGGATGGAACGCAGCTGAATGGGAGGGACAGTTTGGAGATTTTGCAGCGGGCGTTGGAGGGTAAAAGGGGAAGATTCCGGGACGGAAAGGGAGGGAGGGATAGATACGTGGAATTCGTAAATAGAAAGATGGAGAGGAAGGATAGGAAACTGAGGGATGAAAGGAGGTTGGATATGCTCTGCGTGGCTCTCGCGCTTTTGTCCTTTGCGGCTCTTtccactttctttctcttctga 999 0.6336 MTCTDNTATGDEATGATTISAVHPDVIQTHILTCLDGPALASVASTCSQLHALSAQEPLWAEICRSTWPSTNAPRVRHVISTFPRASRSFFSDSFPPFAARGSRPAGIERALELISSVDLFHGRRAVLSRVVETETESGWFRCSPFRVDVLDPKDAVATAVEYPKSEEACEGLGEEFRLSWIVVDPKGRRAVNVSSGRAVSVERHWLSGEVRVRFATVVGGGERGSASEEALCSVTVTFGGEMQVREACLQMEDMDGTQLNGRDSLEILQRALEGKRGRFRDGKGGRDRYVEFVNRKMERKDRKLRDERRLDMLCVALALLSFAALSTFFLF 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0827 332 SUPERFAMILY F-box domain 24 86 IPR036047 GO:0005515
Ssu4g0827 332 PANTHER OS12G0156500 PROTEIN 7 326 - -
Ssu4g0827 332 Gene3D - 12 92 - -
Ssu4g0827 332 PANTHER F-BOX PROTEIN-RELATED 7 326 IPR045283 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0827 Ssu-Chr4 12990853 12991851 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0827 - - gmx:100801673 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0827 4 12990853 12991851 Ssu4g0827 4 12990853 12991851 ECH
Ssu7g1930 7 38654886 38656416 Ssu4g0827 4 12990853 12991851 PCT