Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1919 ATGGTTGCGCCTTGTCCAACTTCCATGATGGTAAGAACCAAGAAAACAAAGGCTATGGGAATTCCGACGATCGACCTTTCTATGGAAAGGTCAAAGTTGTCGGAACTAGTGGTGAAAGCATGTGAGGAATATGGTTTCTTCAAGGTGGTGAACCACAGTGTGCCCAAGGAGGTCATTTCAAGATTGGAAGAGGAGGGAACAGAGTTCTTCTCCAAAACCTCCTCAGAGAAGCGTCAAGCTGGCCCTGCCAATCCTTTTGGTTATGGCTGCAGAAATATTGGCCCCAATGGCGATATGGGTCACCTTGAGTATCTCCTCCTTCATACCAATCCTCTTTCCATATCTGAGAGATCCAAAACTATAGCAAACGACCCTACCAAGTTCAGTTGCGCGGTGAATGATTATATAGAAGCAGCTAAAGAACTAACATGTGAGATTCTTGATCTGGTGGTGGAGGGTTTGTGGGTCCAAGACAAGTTCTCACTGAGCGAGCTCATCAAAGACGTCCATAGTGACTCACTCCTTAGGATCAATCAATACCCTTCCGTGAAGGGCAACAAGAATTGGGACACGTCCAAACTTGAGGCACATCAACTCCAGAgcgaaaataataataataacaataacaataacattggCTTTGGAGAGCATTCTGACCCTCAGATCTTGACCATCATGCGGTCCAACAACGTGGGTGGCCTTCAGATTTCCACCCACGACGGGTTGTGGATCCCTGTCCCCCCTGACCCCAATGAATTCTTCGTTATGGTTGGCGATGCCCTGCAGGTTTTGACAAATGGAAGGTTTGTAAGCGTGAGACACAGAGTATTGACCAACACAACGAACACCAGAATGTCAATGATGTACTTTGCAGCACCACCGCTGAATTGGTGGATCACTCCAATGCCAAAGATGGTGACACCCCACAATCCAAGTCTGTATAAGCCCTTCACTTGGGCCCAATACAAGCAAGCAGCATACTCTCTTAGATTGGGAGACTCTCGCCTTGATCTCTTCAAgatccaacaacaacaagataGCCATCTCGCACCTGCTTCTCCCTGA 1065 0.4535 MVAPCPTSMMVRTKKTKAMGIPTIDLSMERSKLSELVVKACEEYGFFKVVNHSVPKEVISRLEEEGTEFFSKTSSEKRQAGPANPFGYGCRNIGPNGDMGHLEYLLLHTNPLSISERSKTIANDPTKFSCAVNDYIEAAKELTCEILDLVVEGLWVQDKFSLSELIKDVHSDSLLRINQYPSVKGNKNWDTSKLEAHQLQSENNNNNNNNNIGFGEHSDPQILTIMRSNNVGGLQISTHDGLWIPVPPDPNEFFVMVGDALQVLTNGRFVSVRHRVLTNTTNTRMSMMYFAAPPLNWWITPMPKMVTPHNPSLYKPFTWAQYKQAAYSLRLGDSRLDLFKIQQQQDSHLAPASP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1919 354 Pfam 2OG-Fe(II) oxygenase superfamily 205 292 IPR044861 -
Ssu7g1919 354 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 85 IPR026992 -
Ssu7g1919 354 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 4 342 - -
Ssu7g1919 354 Gene3D - 3 330 IPR027443 -
Ssu7g1919 354 SUPERFAMILY Clavaminate synthase-like 6 333 - -
Ssu7g1919 354 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 301 IPR005123 -
Ssu7g1919 354 PRINTS Isopenicillin N synthase signature 37 54 - -
Ssu7g1919 354 PRINTS Isopenicillin N synthase signature 217 238 - -
Ssu7g1919 354 PRINTS Isopenicillin N synthase signature 253 279 - -
Ssu7g1919 354 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1919 Ssu-Chr7 38417590 38422166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1919 12 341 Glycosyltransferase AT5G59530 27.035 3.18e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1919 K04125 - gmx:100779525 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1919 7 38417590 38422166 Ssu7g1919 7 38417590 38422166 ECH
Ssu4g0554 4 8785558 8791800 Ssu7g1919 7 38417590 38422166 PCT