Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0554 atgGTTGTGCCTTCTCCAACTTCCATCACGATAAGTTGCAAGAAAACAAAGGCAATGAGAATCCCAACGATTGACCTGTCGATGGAAAGGTCGGAGTTGTCGGAAATAGTGGTAAGAGCCTGCGAGGAATACGGTTTCTTCAAGGTGGTTAACCACAGTGTGCCGAAGGAGGTTATTTGGAGATTGGAAGAGGAGGGAGCCGAGTTTTTCGCGAAACCCACCCAAGAGAAGCGTAAAGCTGGGCCAGCTAGTCCTTTCGGTTATGGCTTCAGCAATATCGGGCCCAACGGAGATATGGGTGACCTCGAGTATCTCCTGCTTCATGCTAATCCTCTTTCCATCTCCGAGAGATCCAAAACCATCGCTCACGACGCCACCAAGTTCAGTTGTGTTGTGAATGATTATGTAGAAGCTGTAAAAGAAGTAGCGTGTGAGATTCTAGATCTGGTGGTAGAGGGTTTGGGGGGCCCAGACAAGTTCGCACTTAGCAGGCTCATCAGAGATGTCCGTAGTGATTCAGTCCTTAGGATCAATCACTACCCTCCACTGAACCAGAAGTTGGAGGGCAACAAGAATAGCATTGGTTTTGGGGCGCATTCTGACCCTCAGATCTTGACCATCATGCGGTCCAACGACGTGGGTGGCCTTCAAATTTACACCCGTGACGGGTTGTGGATACCTGTCCCCCCTGACTCCAATCAATTCTTTGTCATGGTTGGCGATGTCCTCCAGGTTTTGACAAATGGAAAGTTCATGAGCGTGAGGCACAGGGCATTAACCAACACATTGAAGGCAAGGATGTCAATGATGTACTTTGCAGCACCACCACTTGATTGGTGGATCAATCCGCTACCCAAGATGGTGTCACCACCACAAAATCCCAGTCTATACAAGCCCTTCACGTGGGCCCAGTACAAGCAAGCAGCATATTCCTTACGCCTCGGAGATTCTCGACTTGATCTCTTCAAGGCCCAGCTAGATACTCATCTTGTGCCTGCCTCTCCATCACAAATTcaatgttga 1023 0.4858 MVVPSPTSITISCKKTKAMRIPTIDLSMERSELSEIVVRACEEYGFFKVVNHSVPKEVIWRLEEEGAEFFAKPTQEKRKAGPASPFGYGFSNIGPNGDMGDLEYLLLHANPLSISERSKTIAHDATKFSCVVNDYVEAVKEVACEILDLVVEGLGGPDKFALSRLIRDVRSDSVLRINHYPPLNQKLEGNKNSIGFGAHSDPQILTIMRSNDVGGLQIYTRDGLWIPVPPDSNQFFVMVGDVLQVLTNGKFMSVRHRALTNTLKARMSMMYFAAPPLDWWINPLPKMVSPPQNPSLYKPFTWAQYKQAAYSLRLGDSRLDLFKAQLDTHLVPASPSQIQC 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0554 340 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 275 IPR005123 -
Ssu4g0554 340 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 94 IPR026992 -
Ssu4g0554 340 Gene3D - 3 313 IPR027443 -
Ssu4g0554 340 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 6 4 325 - -
Ssu4g0554 340 Pfam 2OG-Fe(II) oxygenase superfamily 172 274 IPR044861 -
Ssu4g0554 340 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 4 325 - -
Ssu4g0554 340 SUPERFAMILY Clavaminate synthase-like 6 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0554 Ssu-Chr4 8785558 8791800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0554 19 323 Glycosyltransferase AT5G59530 27.760 2.16e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0554 K04125 - gmx:100777233 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0554 4 8785558 8791800 Ssu4g0554 4 8785558 8791800 ECH
Ssu4g0554 4 8785558 8791800 Ssu7g1919 7 38417590 38422166 PCT