Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1887 ATGAAGAGACTTTCAACTTTGGTGGATGTGTTTCTGGTTCTTGCATTGTTGAGTTGCAGCCCATGGACAGTCTGGAGCAGCTCGTGCTGCAGTCACATAAACTTGAAGGAAGTTCGACCTCACAGTGTCAGTATTACCGAATTTGGAGCAGTTGGCGATGGGATCACTCTCAATACAAAAGCATTTCAAAATGCCATCTTCTACCTAAATTCATTTGCGGACAAAGGTGGAGCCAAGCTTTTTGTCCCAGCTGGCCGGTGGTTAACTGGAAGCTTTGATCTCATCAGCCATCTAACTTTGTGGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTCTGACGATTGGCCAGTTGTGGATCCTCTACCATCATACGGTCGTGGAAGGGAGTTGCCGGGTGGTAGGCATAGAAGCCTCATTTATGGGCGCAATTTGACTGATGTTATCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATCTGGTGGAACAAGTTTCGGAACAAAACACTGGATTATACACGTCCTCATTTGGTTGAGTTGATGAATTCAACTGGGGTTCTCATTTTGAATGTAACTTTCTTGAATTCACCATTTTGGACTATTCACCCTGTATATTGCAGCCATGTTACAATTCAGAATGTCACAATCGTTGCTCCTCTCAGTTCACCAAATACAGATGGCATTAATCCGGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATTAAAAGTGGATGGGATGGATATGGCATTTCATTTGGTCGACCCAGTACAAATATTAACATCCGCCGGCTCATTGGGAAGACAACGAGTGCAGGGATTGCTATTGGAAGTGAGATGTCTGGTGGTGTATCAGAAGTTCATGCAGAAGATATTTACATTTTTGATTCGCATAGTGCAATTAGAATAAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTACATCTCTAACATGATCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCAGATGACACTTATGACCCAGATGCTCTGCCGGTAATAGAAAGGATTACTATAAAGGATGTGATAGGGGAAAAAGTCAAACGTGCCGGCCTTATACAGGGTATTAAAGGGGACAACTTTGTCAATATCTGCCTATCAAACATCACCCTGAATGTGAGCTCAAAATTTCCATGGAACTGCTCTTACGTTGAAGGATACTCTGACTTGGTTTCACCGGAAGCATGTGAGCCTCTCAAAGAGAGAATATTCCCTGAGCATTGTTCAGACTGTTACTATTTACCAAATCACTTACAGAGTTTGAGTAATCAAAACTGGGGTGCTTGGTTACTGTCTTGGTAA 1398 0.4199 MKRLSTLVDVFLVLALLSCSPWTVWSSSCCSHINLKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGRNLTDVIITGNNGTIDGQGSIWWNKFRNKTLDYTRPHLVELMNSTGVLILNVTFLNSPFWTIHPVYCSHVTIQNVTIVAPLSSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLIGKTTSAGIAIGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVRNVYISNMILANVDIAIRFTGLYGEHPDDTYDPDALPVIERITIKDVIGEKVKRAGLIQGIKGDNFVNICLSNITLNVSSKFPWNCSYVEGYSDLVSPEACEPLKERIFPEHCSDCYYLPNHLQSLSNQNWGAWLLSW 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1887 465 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 29 - -
Ssu7g1887 465 SMART pbh1 210 236 IPR006626 -
Ssu7g1887 465 SMART pbh1 271 292 IPR006626 -
Ssu7g1887 465 SMART pbh1 298 319 IPR006626 -
Ssu7g1887 465 SMART pbh1 327 348 IPR006626 -
Ssu7g1887 465 SMART pbh1 237 269 IPR006626 -
Ssu7g1887 465 SUPERFAMILY Pectin lyase-like 35 431 IPR011050 -
Ssu7g1887 465 Gene3D - 23 417 IPR012334 -
Ssu7g1887 465 Pfam Glycosyl hydrolases family 28 138 417 IPR000743 GO:0004650|GO:0005975
Ssu7g1887 465 PANTHER OS07G0245200 PROTEIN 8 447 - -
Ssu7g1887 465 PANTHER PECTIN LYASE-RELATED 8 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1887 Ssu-Chr7 37815539 37818735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1887 1 465 Glycoside Hydrolase AT3G62110 68.499 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1887 - - gmx:100786985 923.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0516 4 8208344 8211236 Ssu7g1887 7 37815539 37818735 PCT