Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0516 ATGAGGAGACCTTCAACGCTCGTGGAAGTGCTTCTGGTACTAGCATTGTTCAGTTGCAGCCCATGGACAGTGTGGAGCAACACACTTTGCCAACAGACAAACCTGGAGGAAGTTCGGCCTCACAGTGTCAGTATCACCGAATTTGGTGCAGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCCATATTCTACCTAAATTCCTTTGCAGACAAAGGTGGAGCGAAGCTTTTTGTTCCAGCTGGCCGGTGGTTAACTGGTAGCTTTGATCTCATCAGTCATCTAACTTTGTGGTTGGACACAGATGCAGTAATTCTTGGATCAATGAACCCTGAAGATTGGCCAGTTGTGGATCCTCTACCGTCGTATGGGAGAGGAAGAGAGTTGCCAGGTGGAAGGCATAGGAGCCTCATTTATGGGCACAATTTGACTGATGTTATCATAACAGGTAATAATGGAACTATCGATGGTCAAGGGAGTATCTGGTGGAGCATGTTTAGGAACAAAACTCTGGATTATACACGTCCCCATTTGGTAGAATTGATGAATTCAACAGGGGTtctcatttcaaatttaaccTTCTTGAATTCTCCATTTTGGACAATTCATCCTGTATATTGCAGCCAAGTTACAATTCAGAATGTCGCGATCCTTGCTCCTCTTGATTCACCAAACACAGATGGGATTGATCCAGATTCTTCTGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGACGATCTGATTGCCATCAAGAGTGGGTGGGATGAGTATGGCATTGCATATGGTCGCCCAAGCACAAACATTATCATCCACAGGCTCGTTGGGAAAACTCAAACGAGTGCAGGGATTGCTATAGGAAGTGAGATGTCTGGTGGTGTGTCTGAAGTTCATGCAGAAGATATTCAATTCTACGATTCATATACTGCAATCAGAATAAAGACTTCTCCTGGCAGGGGTGGTTATGTTAGAAACATCTATGTCTCTAACATGACCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGGGATCATCCAGATGATGCTTATGACCCAAATGCTCTACCTGTGATAGAAAAGATTACAATCAAGGATGTGGTAGGAGAAAATATCAAAACTGCAGGTCTTGTAGAGGGTATAGAAGGTGACAATTTTGTCAACATTTGCCTATCAAACATCACCCTTGATGTGACTTCAAACTATCCATGGAACTGCTCCTACATTAAAGGATACTCTGACTTGGTTCTGCCAGAAGCTTGTGAGCCTCTGAAGGAAAGAATATTCCCTGAGCATTGTTCAGATTGTTACAATTTGCCAAATCAGCTACAGAGTTCGAATAGTCAAAATAGAGCAGGACAAACCTCAGATGACATAAAAAGTTGA 1410 0.422 MRRPSTLVEVLLVLALFSCSPWTVWSNTLCQQTNLEEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLWLDTDAVILGSMNPEDWPVVDPLPSYGRGRELPGGRHRSLIYGHNLTDVIITGNNGTIDGQGSIWWSMFRNKTLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTIQNVAILAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPSTNIIIHRLVGKTQTSAGIAIGSEMSGGVSEVHAEDIQFYDSYTAIRIKTSPGRGGYVRNIYVSNMTLANVDIAIRFTGLYGDHPDDAYDPNALPVIEKITIKDVVGENIKTAGLVEGIEGDNFVNICLSNITLDVTSNYPWNCSYIKGYSDLVLPEACEPLKERIFPEHCSDCYNLPNQLQSSNSQNRAGQTSDDIKS 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0516 469 Pfam Glycosyl hydrolases family 28 138 418 IPR000743 GO:0004650|GO:0005975
Ssu4g0516 469 SMART pbh1 237 269 IPR006626 -
Ssu4g0516 469 SMART pbh1 210 236 IPR006626 -
Ssu4g0516 469 SMART pbh1 328 349 IPR006626 -
Ssu4g0516 469 SMART pbh1 271 293 IPR006626 -
Ssu4g0516 469 SMART pbh1 299 320 IPR006626 -
Ssu4g0516 469 SUPERFAMILY Pectin lyase-like 37 431 IPR011050 -
Ssu4g0516 469 Gene3D - 23 419 IPR012334 -
Ssu4g0516 469 PANTHER PECTIN LYASE-RELATED 7 452 - -
Ssu4g0516 469 PANTHER OS07G0245200 PROTEIN 7 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0516 Ssu-Chr4 8208344 8211236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0516 1 460 Glycoside Hydrolase AT3G62110 68.094 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0516 - - gmx:100782602 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0516 4 8208344 8211236 Ssu7g1887 7 37815539 37818735 PCT