Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1854 ATGGCTAACCATACCATGAAGCTGGCGAACTTGTTGCTTCTCGTGACTCTGGCCCTGCTCTTAGCCACCGCTATCTCATCAGATCCCGACCTTCTTCAAGACCTCTGTGTCGCCGACCTTGCCTCAGGTGTGAAAGTGAATGGATTCACGTGCAAAGAGGCATCCAAGGTAAATGCTTCAGATTTCTTCTCCAACATACTAGCCAGACGAGGAGCCACTAACAACACCTTCGGCTCGTTGGTGACTGGAGCCAACGTTGAGAGAGTCCCTGGACTCAACACCCTCGGTGTCTCTCTGTCGAGGATTGACTATGCCCCAGGTGGCATCAACCCACCTCACACCCACCCACGTGCCACCGAGATAGTGTTTGTGCTTGAAGGGCAACTGGATGTGGGGTTCATAACCACAGCCAATGTGCTCATATCAAAGACCATTAACAAGGGTGAAATATTTGTGTTCCCAAAAGGCTTGGTTCACTTCCAAAAGAACAATGCTAAGGTTCCTGCTGCTGTGATTTCAGCCTTCAACAGCCAACTTCCAGGGACACAGTCCATTGCTACAACTTTGTTTGCTGCCACTCCATCTGTCCCAGACCATGTCTTGACCAAGACCTTCCAAGTGGGAACCAAGGAGGTTGAGAAAATCAAGTCTAGGCTTGCACCCAAGAAGTAA 672 0.5 MANHTMKLANLLLLVTLALLLATAISSDPDLLQDLCVADLASGVKVNGFTCKEASKVNASDFFSNILARRGATNNTFGSLVTGANVERVPGLNTLGVSLSRIDYAPGGINPPHTHPRATEIVFVLEGQLDVGFITTANVLISKTINKGEIFVFPKGLVHFQKNNAKVPAAVISAFNSQLPGTQSIATTLFAATPSVPDHVLTKTFQVGTKEVEKIKSRLAPKK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1854 223 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 17 221 - -
Ssu7g1854 223 PANTHER GERMIN-LIKE PROTEIN 17 221 - -
Ssu7g1854 223 CDD cupin_OxOx 28 219 - -
Ssu7g1854 223 SMART Cupin_1_3 64 213 IPR006045 -
Ssu7g1854 223 Pfam Cupin 67 212 IPR006045 -
Ssu7g1854 223 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Ssu7g1854 223 Gene3D Jelly Rolls 27 221 IPR014710 -
Ssu7g1854 223 SUPERFAMILY RmlC-like cupins 28 218 IPR011051 -
Ssu7g1854 223 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Ssu7g1854 223 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Ssu7g1854 223 PRINTS Germin signature 113 133 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1854 Ssu-Chr7 37319249 37320855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1854 6 223 Miscellaneous Gene Families AT3G05930 54.795 2.10e-87 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1854 - - gmx:100791828 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1854 7 37319249 37320855 Ssu7g1854 7 37319249 37320855 ECH
Ssu4g0484 4 7700172 7701489 Ssu7g1854 7 37319249 37320855 PCT