Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0484 ATGAAGCTCACAGGCTCGCTGCTACTGTTGTTGACTCTTGCTATGGTGTTAACCACCACTACTGCATCAGATCCCGATCCTCTTCAAGACCTCTGTGTCGCAGACCTTGCCTCAGCGGTTAAAGTGAATGGATTCACCTGCAAAGATGCTTCCAAGGTAAATGCATCTGATTTCTTCTCAGACATACTAGCCAAACCGGGTGCCACAAACAACACCTATGGCTCCCTAGTGACTGGAGCCAACGTTGAGAAAGTCCCAGGACTCAATACCCTTGGTGTGTCTTTGTCACGCATTGACTACGCCCCAGGTGGCCTCAACCCACCTCACACTCACCCACGTGCCACCGAGATAGTGTTTGTGCTTGAAGGGACACTAGATGTGGGGTTCATAACCACAGCCAATGTGCTCATATCAAAGACCATCACCAAGGGTGAGATATTTGTGTTCCCAAAAGGCTTGGTTCACTTCCAAAAGAACAACGCCAAGGAACCGGCTACAGTGATTGCAGCCTTCAACAGTCAATTGCCTGGCACGCAGTCCATTGCTCTCACCTTGTTTACAGCCACGCCACCGGTTCCAGACAATGTGTTAACCAAGGCATTCCAGGTGGGTACCAAGGAGGTTGAGCAAATCAAGTCTAGGCTTGCACCCAAGAAATAA 660 0.497 MKLTGSLLLLLTLAMVLTTTTASDPDPLQDLCVADLASAVKVNGFTCKDASKVNASDFFSDILAKPGATNNTYGSLVTGANVEKVPGLNTLGVSLSRIDYAPGGLNPPHTHPRATEIVFVLEGTLDVGFITTANVLISKTITKGEIFVFPKGLVHFQKNNAKEPATVIAAFNSQLPGTQSIALTLFTATPPVPDNVLTKAFQVGTKEVEQIKSRLAPKK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0484 219 Pfam Cupin 63 208 IPR006045 -
Ssu4g0484 219 SMART Cupin_1_3 60 209 IPR006045 -
Ssu4g0484 219 PANTHER GERMIN-LIKE PROTEIN 12 217 - -
Ssu4g0484 219 ProSitePatterns Germin family signature. 104 117 IPR019780 GO:0030145
Ssu4g0484 219 CDD cupin_OxOx 24 215 - -
Ssu4g0484 219 SUPERFAMILY RmlC-like cupins 24 214 IPR011051 -
Ssu4g0484 219 Gene3D Jelly Rolls 23 217 IPR014710 -
Ssu4g0484 219 PRINTS Germin signature 139 159 IPR001929 GO:0030145
Ssu4g0484 219 PRINTS Germin signature 109 129 IPR001929 GO:0030145
Ssu4g0484 219 PRINTS Germin signature 172 187 IPR001929 GO:0030145
Ssu4g0484 219 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0484 Ssu-Chr4 7700172 7701489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0484 4 219 Miscellaneous Gene Families AT3G05930 55.760 6.22e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0484 - - gmx:100302722 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0484 4 7700172 7701489 Ssu4g0484 4 7700172 7701489 ECH
Ssu4g0484 4 7700172 7701489 Ssu7g1854 7 37319249 37320855 PCT