Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1852 ATGCTTGCTTTTCGGATCACTCGAAGTTCTGGCTTTGGTAATGCTCACGGTTCAAGCGCTATGGACCATCTGCACCCAGATGCTTGCGGCAAGTCAAGCTGTGTCAAAGGTGGCATAGCTGTCATGTTTTACACATCATTGTATTTGTTGGCTTTCAGCATGGGAGGAGTAAGAGGTTCCCTGACTGCATTTGGTGCTGACCAATTTGATGAAAAGAATCCAAGAGAAGCAAAGGCTCTTGCAAGCTTCTTCAATTGGCTCTTGCTGAGCTCAACCACAGGATCAATTATAGGTGTCACCGGGGTTGTGTGGATTAGCACCCAAAAGGCTTGGCACTGGGgctttttaataataaccatAGCTTCCTCCATTGGCTTTCTCACCCTTGCTCTTGGCAAGCCATTTTACCGCATCAAAACTCCTGGTCAAAGCCCCATTTCGAGGATTGCTCAGGTTATTGTTGTGGCTTTTAAAAACCGAAAGCTACCACTGCTAGAGTCGCATGAAGAACTTTATGAGGTCTATGAAGATGCTACAATAGAGAAGATTGCACACACCAACCAAATGAGGTTTctagataaagcaagcattctTCAAGAAAACATTGAACCACAGCCATGGAAGGTGTGTACAGTGACACAAGTTGAAGAAGTGAAGATCCTAACCAGAATGTTACCTATATTAGCCAGCACCATTATAATGAACACTTGTTTAGCACAGCTTCAAACATTCTCAGTGCAGCAGGGTAATGTGATGAACCTGAAACTGGGTTCTTTTACTGTGCCTGCACCATCCATTCCTGTTATCCCCCTTCTTTTCTTGTCCATCCTGATTCCCATGTACGAATTCTTCTTTGTGCCATTCGCACGAAAGATCACTCACCACCCTTCTGGCGTTACACAACTTCAAAGAGTTGGTGTGGGGTTAGTACTCTCTTCCATTTCAATGGCAATAGCTGGGATAGTAGAAGTGAAAAGAAGGGACCAAGGAAGGAAGGACCCCTCAAGGCCAATAAGTCTTTTTTGGTTATCCTTCCAATATGCTATATTTGGAATTGCAGACATGTTCACTCTTGTAGGACTCCTAGAATTCTTCTACAGAGAAGCACCAGCAACCATGAAGTCACTTTCAACTTCTTTCACATACTTGTCCATGTCTCTTGGTTACTTCTTGAGTACAGTCTTTGTGGATGTCATTAATGCTGTTACCAAAAGGATCACTCCAAGCAAACAAGGATGGTTGCATGGGTTGGACCTAAACCAAAACAATCTCAATTTGTTCTATTGGTTCCTAGCAATCCTTAGctgccttaatttttttaacttccttTACTGGGCCTCTTGGTACAAGTACAAATCTGAAGACACCTATTTAAAGCTGAATTTGAAGGTTATCAAAAATAATGGTGAGAGAAAACAAGATGAGGGAGAGAAGAAGAACGGGAGTGGCCAAGATATGAAAGCTAAGGCTAAAGAAAGCAGCCAAACGAGTGAAGCCAATACTGAGGGACCCTCTTCCTCTGATGAAACAGATGATGGAAGGAACTCTAGGGAATGGAAGCACAGATAA 1569 0.4175 MLAFRITRSSGFGNAHGSSAMDHLHPDACGKSSCVKGGIAVMFYTSLYLLAFSMGGVRGSLTAFGADQFDEKNPREAKALASFFNWLLLSSTTGSIIGVTGVVWISTQKAWHWGFLIITIASSIGFLTLALGKPFYRIKTPGQSPISRIAQVIVVAFKNRKLPLLESHEELYEVYEDATIEKIAHTNQMRFLDKASILQENIEPQPWKVCTVTQVEEVKILTRMLPILASTIIMNTCLAQLQTFSVQQGNVMNLKLGSFTVPAPSIPVIPLLFLSILIPMYEFFFVPFARKITHHPSGVTQLQRVGVGLVLSSISMAIAGIVEVKRRDQGRKDPSRPISLFWLSFQYAIFGIADMFTLVGLLEFFYREAPATMKSLSTSFTYLSMSLGYFLSTVFVDVINAVTKRITPSKQGWLHGLDLNQNNLNLFYWFLAILSCLNFFNFLYWASWYKYKSEDTYLKLNLKVIKNNGERKQDEGEKKNGSGQDMKAKAKESSQTSEANTEGPSSSDETDDGRNSREWKHR 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1852 522 MobiDBLite consensus disorder prediction 487 506 - -
Ssu7g1852 522 Gene3D MFS general substrate transporter like domains 3 457 IPR036259 -
Ssu7g1852 522 Pfam POT family 32 412 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu7g1852 522 MobiDBLite consensus disorder prediction 470 486 - -
Ssu7g1852 522 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 19 463 IPR000109 GO:0016020|GO:0022857|GO:0055085
Ssu7g1852 522 SUPERFAMILY MFS general substrate transporter 41 454 IPR036259 -
Ssu7g1852 522 MobiDBLite consensus disorder prediction 470 522 - -
Ssu7g1852 522 MobiDBLite consensus disorder prediction 507 522 - -
Ssu7g1852 522 PANTHER PEPTIDE/NITRATE TRANSPORTER 19 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1852 Ssu-Chr7 37292061 37294548 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1852 24 453 Organic Solute Cotransporters AT1G27040 41.798 1.29e-119 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1852 K14638 - gmx:100817702 927.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1852 7 37292061 37294548 Ssu7g1852 7 37292061 37294548 ECH
Ssu4g0482 4 7681873 7685102 Ssu7g1852 7 37292061 37294548 PCT