Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1829 ATGGCCAAGGAAGCTTCTCTGTGCCTCTTGTTCCTCTCCTTTCTCATCATCTCCTGTTCTGGATCTCTGGTGGGTTTTTCCTACCGTGAGAGAGGAGATGCTTCAACATCTGCTAGAACCATGTCATTCCTCCAGCAAAGCAATGTTTCCTCGTCTCAGATTCGAATTTTCGTCACAGATCATAGGATTTTGAGCACTCTCAGCAACTCCAACGTGCCAACTGATTTGTACTTGAACAGAAGTCAAGttcaaattttcattacttCTAAACCCTCTGCACTAAAAGCTAATCTACTTAACTTTCTCCCACATAGAAACATCAAAAGCATCATTGCTAGCTGTGGCAGGGAGTGCTTAGCCCAGAATGAGATGTCTCTGTTCTTACATGCTTTGAAATCAATTGGTTCAGTTCTCAGCGAGCTTCACATAGGGAGGGGGGTAAAAGTTTCAGTAGCATTTCCACTATCACTCTTAGAAAAGTTGAATGCATCGCATGAAAACGATATCCGTAGGATTCTTTCATTCATAAAGGAAATGAAATCCTTTGTCATGGTAGAAGACAACATTGATGGAAACGAATTAAGCATATGGGATCACTTTGTTCATGCTATCATCAAACGAGCCACTCTTGCTGCTTCCATTCTTCCTTGCAAAAATGTTCCCCTTGTTCTGACAATCAAGAGCACAGTTATCCCCCGTTCAATGGAAATAGCTCAGTTTAGTGAGAGAGTATCCAAATATCTAGAATCCAAAACTCATATTACAAAAAGAATAGCTGCATTATATGCAGAGGTGCATGCAGCAGAAGATTTTGCAAGGAAAGAGATCAAAAGGAGAAGTCTAGATGACACAACCAACCCAACAAACAGAGTTTTCCCCACAAATCCGGCATCATCCACACCAATCATCACACCCCCGGATACACCAACCATCATCACAGTTCCTGCCGCCAATCCTGTCACAATTTCCCCCACCAATCCTGCTGCGATGCCTGTGACAGTTCCTTCTACCACACCTGTGCCTTTACCTCCCACAAATCCAGCCAATTCACCAGTACCAGTCAGCAACCCGGCTACAGCAACTCCTGTAGGGACACCACCACCAGTAACCACATCTTATACACCTCCATCAGGAAATGTTCCTGTCATAAACCCCCAACCACAACCACCTCCTACAAACACTAATGCTCCAGCCATTCAGGGGCAGAGTTGGTGTGTGGCAAAGCAAGGAGCTAGCGAAGCTGCTCTTCAAGCAGCCCTGGACTACGCTTGTGGAATGGGTGGGGCAGATTGTTCTCAAATACAGCAGGGTGGGAATTGTTACAATCCAGCCACTTTGCAGAACCATGCTTCTTTTGCATTCAACAGCTACTATCAAAAGAACCCAGCTCCAACAAGCTGTGACTTTGGAGGGACTGCCACCTTAGTCAACACAAATCCAAGCTCGGGTTCATGCATTTTCCTATCATCATCGTCGGCATCATCAACAACCACCCCAAAGTCATCATCCCCAACACCACCTACACAATCAAGTCCAACACAACCCCCACCAAGTCCAGTAACACCTGCACCATCAATTCCAACAGCACCACCAACACCACCGTCATCTTCAGGAGCAGGTGCTTTCGGGTATGGTTCCCCACCTTCAGTGTTAAATTCAAGCAACCCAGCGTCAGGTACAATGCCAGGTTTTGGGTCTGAAAGCCCTCCTGTTGTAAATACCACGTCGGCCTCGCATTCTGTGGGTTTGAGACCTTTTGTTGGCTGCATTGTTCTGACGGTATCATTTGTCACTACGAGACTCAGGATGCACCCATAG 1818 0.4571 MAKEASLCLLFLSFLIISCSGSLVGFSYRERGDASTSARTMSFLQQSNVSSSQIRIFVTDHRILSTLSNSNVPTDLYLNRSQVQIFITSKPSALKANLLNFLPHRNIKSIIASCGRECLAQNEMSLFLHALKSIGSVLSELHIGRGVKVSVAFPLSLLEKLNASHENDIRRILSFIKEMKSFVMVEDNIDGNELSIWDHFVHAIIKRATLAASILPCKNVPLVLTIKSTVIPRSMEIAQFSERVSKYLESKTHITKRIAALYAEVHAAEDFARKEIKRRSLDDTTNPTNRVFPTNPASSTPIITPPDTPTIITVPAANPVTISPTNPAAMPVTVPSTTPVPLPPTNPANSPVPVSNPATATPVGTPPPVTTSYTPPSGNVPVINPQPQPPPTNTNAPAIQGQSWCVAKQGASEAALQAALDYACGMGGADCSQIQQGGNCYNPATLQNHASFAFNSYYQKNPAPTSCDFGGTATLVNTNPSSGSCIFLSSSSASSTTTPKSSSPTPPTQSSPTQPPPSPVTPAPSIPTAPPTPPSSSGAGAFGYGSPPSVLNSSNPASGTMPGFGSESPPVVNTTSASHSVGLRPFVGCIVLTVSFVTTRLRMHP 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1829 605 SMART X8_cls 403 487 IPR012946 -
Ssu7g1829 605 MobiDBLite consensus disorder prediction 493 577 - -
Ssu7g1829 605 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 141 570 IPR044965 GO:0004553|GO:0005975
Ssu7g1829 605 MobiDBLite consensus disorder prediction 282 306 - -
Ssu7g1829 605 Pfam X8 domain 404 474 IPR012946 -
Ssu7g1829 605 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 141 570 - -
Ssu7g1829 605 Gene3D - 398 501 - -
Ssu7g1829 605 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Ssu7g1829 605 MobiDBLite consensus disorder prediction 547 577 - -
Ssu7g1829 605 Gene3D Glycosidases 24 188 - -
Ssu7g1829 605 MobiDBLite consensus disorder prediction 505 534 - -
Ssu7g1829 605 MobiDBLite consensus disorder prediction 338 370 - -
Ssu7g1829 605 PRINTS Proline rich extensin signature 490 515 - -
Ssu7g1829 605 PRINTS Proline rich extensin signature 293 309 - -
Ssu7g1829 605 PRINTS Proline rich extensin signature 332 344 - -
Ssu7g1829 605 PRINTS Proline rich extensin signature 346 367 - -
Ssu7g1829 605 PRINTS Proline rich extensin signature 374 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1829 Ssu-Chr7 36932058 36934591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1829 372 487 Glycoside Hydrolase AT2G05790 50.427 1.54e-28 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1829 - - gmx:100781884 773.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1829 7 36932058 36934591 Ssu7g1829 7 36932058 36934591 ECH
Ssu4g0470 4 7524359 7526577 Ssu7g1829 7 36932058 36934591 PCT