Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0470 ATGGCCAAGGAAGCTTCTCTATGCCTCTTGTTCCTCTCTTTTCTCATTATCTGCTCTTCGGGGATTGCATCTTCATCATCTGTTGGTACCACATTCCTCCAGAAAAGCAAGATCTCCGAATCTGAGATTCGATTTTCTGTTACAGATTATAAGATTTTGAGCACTCTGACCAACACCAACCTGTCAGTTGATTTCTTCTTAGATGAAAGCCtggttgaaaattttgtttcatcaaaatCATCTGTAGTTTCATGGCTAAAAACTCATCTTATGAACATTCTTCCACAAGTAGACATCAGAAGCATCATTGTTAGTTGTGGCAGTGAGCGTTTGGGCCAAAATGAGATGCATCTATTGGTACCTATTCTGAAATCAATTCATTCATTTCTCCGCAAGCTTCAACTAAGAAGGGAAATAGAAGTCTCAGTAGCATTTCCACTGTCATTATTAGAGAATTTGAATGCATCATATGAAATTGATCTCCTTAGGTTTGTTATGTTTATAAAGAAGATAGATTCATTTATCATGATAGAAGACATCATTGATGGGGAATCAAGCATTGTTCAGTCTGTTATTGAAAGAGCCACCCTTGCTGCTTCTATTCTTCCATGCAAAGATGTTCCTGTGGTTCTTATAATCAAGAGCCATGATATTCCCAGTTCAATGGAATTAGCTCAATTTAGTGAGGCGGTATCCAAATATCTTCAAGCAGGAtctcattttacaaaaagaataGTTGCATTGTATGCAGAAGTACACACAGCCAAAGATTTTGTACTGAAAGAGCTCAAAAGAGAAGAGGGAGAAGAGATATTTCCTTTGTCCCTTGGAGAAAAGCCAAGCAAAGTCCACATCAGAAGAACTCTGCAAGAAACAACCAACTCACCTACCACAGTTTTCCCCACAAATCCAACCCCATCTTCACCAGTCATCACACCTCCAGATACACCAACCATCATCACAGTTCCTTCCACCAACCCTGTCACAGTTTCCCCCACCAATCCAGCTGCAACACCTGTGACAGTTCCTTCTACCACACCAGTTGTTCCCTTAGCCCCTCCTACAAATCCAGCCAATCCAGGGACACAACCAGTTACAAGCCCTGTGACTTCTTATCCACCCCCATCAGGAAGTGTTCCTGTCACAAATGCCCTTCCTCCTCCTCCAAACACAAATGCTCAAGCCATGCCAGGGCAGAGTTGGTGTGTGGCAAAGAGTGGAGTTCCAGAAGCTTCTCTTCAATCGGCACTGGACTATGCTTGCGGAATGGGAAGTGTAGACTGTTCACAAATGCAGCAAGGTGGGAGTTGTTACAATCCAAATTCTATACAAAACCATGCTTCTTTTGCCTTTAACAGCTACTACCAAAAGAATCCTGCGCCAACAAGCTGTGATTTTGGAGGCACTGCCACCATAGTTAACACCAATCCAAGCTCGGGTTCTTGCATTTACCCATCATCTTCAGGAGCAGGCACACCCAGCTCTGATAGTCCACCTTCAGTTTTGGGGTCCCAGAGCCCTCCTAATTTAGATACCTCGTATTCAGCTAGTCTGAGACCTTTTCTTCGTTGCATGGTTCTGGCGATATCGTTAGTCACTGTAAGACTCACTATATAA 1617 0.4199 MAKEASLCLLFLSFLIICSSGIASSSSVGTTFLQKSKISESEIRFSVTDYKILSTLTNTNLSVDFFLDESLVENFVSSKSSVVSWLKTHLMNILPQVDIRSIIVSCGSERLGQNEMHLLVPILKSIHSFLRKLQLRREIEVSVAFPLSLLENLNASYEIDLLRFVMFIKKIDSFIMIEDIIDGESSIVQSVIERATLAASILPCKDVPVVLIIKSHDIPSSMELAQFSEAVSKYLQAGSHFTKRIVALYAEVHTAKDFVLKELKREEGEEIFPLSLGEKPSKVHIRRTLQETTNSPTTVFPTNPTPSSPVITPPDTPTIITVPSTNPVTVSPTNPAATPVTVPSTTPVVPLAPPTNPANPGTQPVTSPVTSYPPPSGSVPVTNALPPPPNTNAQAMPGQSWCVAKSGVPEASLQSALDYACGMGSVDCSQMQQGGSCYNPNSIQNHASFAFNSYYQKNPAPTSCDFGGTATIVNTNPSSGSCIYPSSSGAGTPSSDSPPSVLGSQSPPNLDTSYSASLRPFLRCMVLAISLVTVRLTI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0470 538 MobiDBLite consensus disorder prediction 355 377 - -
Ssu4g0470 538 SMART X8_cls 400 484 IPR012946 -
Ssu4g0470 538 Pfam X8 domain 401 471 IPR012946 -
Ssu4g0470 538 Gene3D Glycosidases 20 179 - -
Ssu4g0470 538 Gene3D - 393 489 - -
Ssu4g0470 538 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 130 498 IPR044965 GO:0004553|GO:0005975
Ssu4g0470 538 MobiDBLite consensus disorder prediction 484 509 - -
Ssu4g0470 538 PANTHER CARBOHYDRATE-BINDING X8 DOMAIN PROTEIN 130 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0470 Ssu-Chr4 7524359 7526577 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0470 364 487 Glycoside Hydrolase AT2G05790 41.860 5.03e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0470 - - ccaj:109798054 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0470 4 7524359 7526577 Ssu7g1829 7 36932058 36934591 PCT