Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1763 ATGTCTTCTCTGAGCAGAGAATTGGTGTTTCTCATACTCCAATTTCTGGAGGAAGAGAAATTCAAAGAGTCCGTACACAAGCTTGAGAAAGAATCCGGGTTCTTTTTCAACATGAAGTACTTTGAGGAAAAAGTGCAGGCTGGCGAGTGGGAAGAGGTTGAGAAGTACTTATCAGGGTTTACCAAGGTTGATGATAATAGATACTCGATGAAAATATTCTTTGAAATCAGGAAGCAGAAATATCTGGAAGCACTTGATCGgCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGgtgatttaaaaatgttttccaCCTTCAATGAGGAGCTATACAAAGAAATAACCCAGTTATTAACTCTTAATAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAAGCATTATGTTGATAGAGCTAAAAAAACTCATAGAGGCAAATCCTCTTTTCCGTGATAAGCTTATCTTCCCTACCCTTAAGTCGTCAAGACTGCgaactttaatcaatcaaagTCTAAACTGGCAGCACCAGCTCTGCAAAAACCCAAGGCCAAATCCAGATATAAAGACTCTATTCACAGATCACACATGTGCACCTCCAAATGGTCCTCTGGCACCCACACCTGTCAATCTTCCAATTGCTGCAGTTGCAAAGCCTGCTGCTTATACTTCACTTGGAGCTCATGGTcCCTTCCCACCTGCTGCTTCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCCTCAGCTTCATCATCTGTCCAAGCAGCTGTTGTCACGGCATCAACCATGCCTGTTCCACAGAATCAAGTGTCTATCTTGAAACGTCCTAGAACACCTCCTGCAACTCCTGGGATGGTTGATTATCAGAATGCTGATCATGAGCAGCTAATGAAGAGGCTTCGTCCTGGTCATTCTGTAGAGGAGgtTTCTTATCCCTTGGCTCGACAAGCCTCGTGGTCACTTGATGATCTACCAAGAACGATGACTATGACGTTGCATCAAGGATCCTCTGTGACAAGCATGGATTTTCATCCTTCTCATCATACCTTACTTCTTGTTGGTTCAAATAATGGCGAAATTACCCTCTGGGAACTCAGTTTGCGAGAAAAGTTGGTCTCAAAGCCATTCAAGATATGGGATGTGTCTGCATGCTCATTACCATTTCAGGCTGCTGCAGTCAAGGATGCACCTATTTCTGTCAGTCGGGTCACATGGAGCCCTGATGGAAGTTTTGTGGGTATTGCTTTTACTAAACATTTGATTCACTTGTATGCCTACACTGGTTCAAATGAGCTAGCCCAGCGTATAGAGGTTGATGCTCATGTTGGTGGTGTGAATGACTTAGCATTTGCTCATCCAAATAAACAGCTGTGTGTGGTGACTTGTGGGGATGATAAGTTGATAAAGGTATGGGATTTAAATGGACGAAAACTATTCACCTTTGAGGGGCACGAGGCACCTGTATATTCCATTTGTCCCCATCACAAAGAGAACATTCAGTTCATATTTTCAACTGCCATTGATGGGAAAATAAAGGCATGGTTATACGATAACATGGGTTCTAGGGTTGACTATGATGCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAGGTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGATTCAGAAAAAAATCTGCTGGTGTTGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAAGATGGTCAAGTTAAGTTTTGGGACATGGACAATATTAATCTTCTAATAAGCACTGATGCTGATGGAGGATTACAGGGCCTTCCACGCTTGAGATTCAACAAGGAAGGAAATATTCTTGCTGTTACTACTGTGGACAATGGATTCAAGATACTTGCTAATGCTACTGGTCTTAGATCTTTAAGAACAATTGAAACTCCGGCATTTGAAGCATTCAGGTCACCCATTGAATCAGCTGCAATCAAGGTATCTGGCTCTTCTACTGTTAATGTTAGTCCTGTCAACTGTAAAGTGGAAAGAAGCTCCCCTGTCAGGCCTTCTCCAATTCTTAATGGAGTTGATCCCATGGGCCGAAGTGTAGAGAAACCAAGAACTGTGGAAGATGTAATAGATAGAGCTAAACCATGGCAACTATCTGAAATTGTAGATCCTGTCCAATGTCGGTCAGTTACCATGCCTGACAGCACAGATTCTTCCAGCAAGGTTGTTAGACTTCTATATACAAACTCTGGTGTTGGTATTTTGGCCCTTGGTTCAAATGGTATCCAGAAGCTTTGGAAATGGGCTCGCAATGAACAGAATCCTACTGGGAAGGCTACTGCGAGTGTTGTTCCACAGCATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATATCTCAGGTGTCAACCTTGAAGAAGCAGTCCCTTGCATTGCACTCTCAAAAAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAGGTTTCCCTGTTTAACATGATGACTTTCAAGGTAATGACAACATTCATGCCACCGCCTCCTGCTTCTACCTTCCTAGCTTTCCATCCCCAGGATAACAACATTATAGCCATTGGGATGGAGGATTCAACCATTCACATCTATAATGTCAGAGTGGATGAGgtgaaatcaaaattgaagggTCACCAGAAGCGTATTACTGGTTTAGCTTTTTCAACCAATCTTAACATACTGGTTTCATCTGGTGCTGATGCTCAACTTTGTATGTGGAGTATTGATACGtgggagaaaagaaaatcaattccAATACAACTACCCGCAGGAAAGTCACCTGTTGGTGATACACGCGTTCAGTTCCATTCTGATCAACATCGCTTATTGGTAGTCCATGAGACTCAGTTGGCAATATATGATGCCTCTAAGATGGAACGCATTCGGCAGTGGGTTCCCCAAGATGTTCTGTCTGCCCCCATATCATATGCAGCTTATTCCTGCAACAGTCAGTTAATATATGCTACATTTTTTGATGCCAACATTGGCGTTTTTGATGCTGATAGCTTGAGGCTCAGATGTCGTATTGCACCAACAATATGCTTGTCACCGGCAGCTTTAAGTGGAAGTCAAGCTGTGTATCCTCTTGTGGTTGCGGCTCATCCACTAGAACCTAACCAGTTTGCTGTTGGGTTGACGGATGGATCTGTCAAAGTGATTGACCCCTCTGAATCAGAGGGTAAGTGGGGATCCTCACCACCTATGGACAATGGAATATTGAATGGTAGGACAGCATCATCATCTACAACAAGCAACCACACGGCTGATCAGTCCCAAAGATAA 3390 0.4221 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKMFSTFNEELYKEITQLLTLNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPPAASTANANALAGWMANASASSSVQAAVVTASTMPVPQNQVSILKRPRTPPATPGMVDYQNADHEQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTMTMTLHQGSSVTSMDFHPSHHTLLLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGSFVGIAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLAFAHPNKQLCVVTCGDDKLIKVWDLNGRKLFTFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGHWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDGQVKFWDMDNINLLISTDADGGLQGLPRLRFNKEGNILAVTTVDNGFKILANATGLRSLRTIETPAFEAFRSPIESAAIKVSGSSTVNVSPVNCKVERSSPVRPSPILNGVDPMGRSVEKPRTVEDVIDRAKPWQLSEIVDPVQCRSVTMPDSTDSSSKVVRLLYTNSGVGILALGSNGIQKLWKWARNEQNPTGKATASVVPQHWQPNSGLLMTNDISGVNLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCMWSIDTWEKRKSIPIQLPAGKSPVGDTRVQFHSDQHRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNSQLIYATFFDANIGVFDADSLRLRCRIAPTICLSPAALSGSQAVYPLVVAAHPLEPNQFAVGLTDGSVKVIDPSESEGKWGSSPPMDNGILNGRTASSSTTSNHTADQSQR 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1763 1129 Gene3D - 960 1117 IPR015943 GO:0005515
Ssu7g1763 1129 Gene3D - 324 563 IPR015943 GO:0005515
Ssu7g1763 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 448 491 IPR001680 GO:0005515
Ssu7g1763 1129 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Ssu7g1763 1129 SUPERFAMILY WD40 repeat-like 831 1092 IPR036322 GO:0005515
Ssu7g1763 1129 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 1129 IPR027728 GO:0006355
Ssu7g1763 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 623 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 397 435 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 528 571 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 439 482 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 1049 1090 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 822 858 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 333 374 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 574 614 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 999 1035 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 904 943 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 861 901 IPR001680 GO:0005515
Ssu7g1763 1129 SMART WD40_4 484 525 IPR001680 GO:0005515
Ssu7g1763 1129 MobiDBLite consensus disorder prediction 1091 1129 - -
Ssu7g1763 1129 SMART ctlh 34 92 IPR006595 -
Ssu7g1763 1129 Gene3D - 747 958 IPR015943 GO:0005515
Ssu7g1763 1129 MobiDBLite consensus disorder prediction 1106 1129 - -
Ssu7g1763 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 911 952 IPR001680 GO:0005515
Ssu7g1763 1129 Pfam WD domain, G-beta repeat 910 943 IPR001680 GO:0005515
Ssu7g1763 1129 Pfam WD domain, G-beta repeat 448 482 IPR001680 GO:0005515
Ssu7g1763 1129 SUPERFAMILY WD40 repeat-like 321 655 IPR036322 GO:0005515
Ssu7g1763 1129 PANTHER PROTEIN, PUTATIVE-RELATED 1 1129 - -
Ssu7g1763 1129 ProSitePatterns Trp-Asp (WD) repeats signature. 469 483 IPR019775 -
Ssu7g1763 1129 Gene3D - 564 692 IPR015943 GO:0005515
Ssu7g1763 1129 SMART Lish 4 36 IPR006594 GO:0005515
Ssu7g1763 1129 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 383 IPR001680 GO:0005515
Ssu7g1763 1129 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 911 946 - -
Ssu7g1763 1129 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1763 Ssu-Chr7 36055036 36063400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1763 429 642 Miscellaneous Gene Families AT5G08390 23.744 1.79e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1763 - - gmx:100793575 2166.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1763 7 36055036 36063400 Ssu7g1763 7 36055036 36063400 ECH
Ssu4g0413 4 6730424 6739822 Ssu7g1763 7 36055036 36063400 PCT