Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g0413 ATGACTTCTTTGAGCCGGGAATTAGTGTTTCTGATACTCCAATTTTTGGAGGAAGAGAAGTTTAAAGAGTCAGTGCACAAGCTTGAGAAAGAATCTGGGTTTTTCTTCAATATGAAGTACTTTGAGGAAAAAGTACAGGCTGGTGAATGGGAAGAAGTTGAGAAGTACTTAACAGGGTTTACCAAAGTTGATGATAATAGATACTCTATGAAAATATTCTTTGAAATCAGGAAGCAGAAGTATCTGGAAGCACTTGATAGGCAAGACAAGGCAAAGGCTGTTGAGATATTAGTGGGTGATTTAAAAGTTTTCTCCACCTTCAATGAGGAACTATACAAAGAAATCACACAGCTGTTAACCCTTAGTAATTTCAGGGAGAATGAGCAGCTGTCCAAGTATGGTGACACCAAAACTGCTCGAGGGATCATGTTGATAGAGCTAAAAAAGCTCATAGAGGCAAATCCTCTTTTCCGTGATAAACTTATCTTCCCTACCCTGAGATCATCAAGATTGCGGACCTTAATCAATCAAAGTTTAAACTGGCAACACCAGCTTTGCAAAAATCCTAGGCCAAACCCAGATATAAAGACTTTGTTCACTGACCACACATGCACACCTCCAAATGGTCCTCTAGCACCTACACCTGTCAATCTTCCAGTTGCTGCAGTTGCAAAGCCTGCTGCTTATACTTCAATTGGAGCTCATGGTCCCTTTCCGCCTGCTGCAGCAACTGCTAATGCTAATGCTTTGGCTGGTTGGATGGCCAATGCTTCAGCTTCATCATCTGTCCAAGCAGCTGTCGTCACAGCATCAACCATACCTGTCCCACAGAATCAAGTGTCTATCTTGAAGCGTCCAAGAACACCTCCAACAACTCCAGGCATGGTTGATTATCAGAATGCTGATCATGAGCAGTTAATGAGAAGATTCCGTCCTGCTCCTTCGGTAGAGGAgGTTTCATATCCTGCTGCTCGACAAGCCTCTTGGTCGCTCGATGATCTCCCGAGAACAGTGGCTATGACATTGCATCAAGGATCCTCTGTGACAAGCATGGACTTTCATCCATCTCACCAAACCTTACTTCTTGTTGGTTCTAATAATGGCGAAATTACACTTTGGGAACTTGGGTTGCGAGACAGGTTGGTCTCAAAGCCATTCAAGATATGGGATATCTCAGTGTGCTCGTTACCATTTCagGCAACCATGGTCAAAGATGCACCTATTTCTGTCAGCCGTGTCACATGGAGCCTTGATGGGAATTTTGTGGGTGTTGCATTTACTAAACATTTGATTCACTTGTATGCCTACACTGGATCAAATGAGCTGGTTCAGCGTATAGAGGTGAGATTATTCATCAGAAGTAACCGAAGTTGTGATTGCAATTTGATTTACATTTCCTTGCTGATGCAGGTTGATGCCCATATTGGTGGTGTTAATGACTTGGCATTTGCTCATCCGAATAAACAACTCTGTATTGTGACTTGTGGAGATGATAAGTTGATAAAGGTTTGGGATTTGACTGGGCGAAAACTATTTAACTTTGAGGGGCATGAGGCACCTGTATATTCTATCTGTCCTCATCACAAGGAGAGCATTCagTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGCTGTATGATAATATTGGTTCTAGGGTTAACTATGATGCCCCAGGTCATTGGTGTACTACAATGCTTTACAGTGCTGATGGCAGCAGACTGTTTTCTTGCGGGACTAGTAAAGATGGAGAGTCATTTCTTGTCGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACGTACAATGGGTTCAGAAAGAAATCTGCTGGTGTCGTGCAGTTTGACACAACCCAAAATCGCTTTTTGGCTGCTGGTGAAGATAGCCAAATCAAATTTTGGGACATGGACAATGTTAATCTTCTAACAAGCACTGATGCGGATGGTGGACTACAGGCCCTTCCGCACTTGAGATTCAACAAGGAAGGAAATCTTCTTGCTATTGCTACTGCAGACAATGGATTCAAAATTCTTGCTAATGCTAATGGTCTTAGATCCTTGAGAACAGTTGAAACTCCAGGATTTGAAGCATTGAGGTTACCCATTGAATCTGCTGCAATCAAGGGATCTGGCTCTTCTGCTGTTAATGTTAGTCCAGTGACTCCAGTCAACTGTAAAGTAGAAAGGAGCTCACCTGTCAGGCCTTCTCCAATTCTTAATGGAGTCGATCCCATAGGTCGAAATGCAGAGAAACCCAGACCTGTGGAAGATGGAATAGATAGAGCTAAACCATGGCAACTGTCTGAAATTGTGGATCCTGTCCAATGTCAGCTAGTTACCATGCCTGACAGTACAGATTCATCCAGCAAGGTCGTTCGACTTTTATATACGAACTCTGGTGCTGGTCTTTTGGCACTTGGTTCAAATGGTGTTCAGAAGCTGTGGAAGTGGGCTCGTAGTGAACAAAATCCCAATGGGAAGGCGACTGCTAGTGTTGTTCCACAGCATTGGCAACCCAACAGTGGTCTTCTTATGACTAATGATGTCTTGGGTGTCAACCTTGATGAAGCTGTTCCTTGCATTGCACTCTCAAAGAATGACTCATATGTTATGTCTGCCTGTGGTGGAAAGGTCTCATTATTTAACATGATGACATTCAAGGTGATGACAACATTCATGCCACCACCCCCTCCATCTACCTTTCTGGCTTTCCACCCTCAAGATAACAACATCATAGCCATTGGGATGGAGGATTCAACAATTCACATTTATAATGTTAGAGTGGACGAGGTGAAATCCAAATTAAAGGGTCACCAAAAGCGAATTACTGGTTTAGCCTTTTCAACCTGTCTTAACATCCTGGTTTCATCTGGTGCTGATGCTCAACTTTGTGTATGGAGCATCGATACAtgggagaaaagaaaatcagTTCCTATCCAACTGCCCGCTGGAAAGGCTCCTATTGGTGACACTCGTGTGCAGTTCCATTCAGATCAAATCCGGTTACTGGTAGCCCATGAGACCCAGTTGGCAATATATGAGGCCTCTAAGATGGATCGCATTCGGCAGTGGGTTCCACAAGATGTTCTGGCTGCTCCCATATCCTATGCAGCTTATTCCTGCAACAGTCAGTTAATTTATGCTACGTTTTGTGATGGCAACACTGGGGTTTTTGACGCCGACAGCTTGAGACTAAGATGTCGTATTGCACTATCCACATACTTTTCACCTGCAGCTTTAAGTGGGAACCAATCTGTGTATCCTCTTGTTGTTGCGGCTCATCCACTAGAGCCCAACCAATTTGCTGTTGGATTAACAGATGGGTCAGTGAAAGTGATAGAGCCAAGCGAATCAGAAGGTAAGTGGGGAACCAGTCCACCTATGGATAATGGAATATTGAACGGTAGGGCAGCGTCATCATCTACAACAAACAACCACACACCCGATCAGGCACAAAGATAA 3468 0.4319 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLNWQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFPPAAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKRPRTPPTTPGMVDYQNADHEQLMRRFRPAPSVEEVSYPAARQASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTLLLVGSNNGEITLWELGLRDRLVSKPFKIWDISVCSLPFQATMVKDAPISVSRVTWSLDGNFVGVAFTKHLIHLYAYTGSNELVQRIEVRLFIRSNRSCDCNLIYISLLMQVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKVWDLTGRKLFNFEGHEAPVYSICPHHKESIQFVFSTAIDGKIKAWLYDNIGSRVNYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQNRFLAAGEDSQIKFWDMDNVNLLTSTDADGGLQALPHLRFNKEGNLLAIATADNGFKILANANGLRSLRTVETPGFEALRLPIESAAIKGSGSSAVNVSPVTPVNCKVERSSPVRPSPILNGVDPIGRNAEKPRPVEDGIDRAKPWQLSEIVDPVQCQLVTMPDSTDSSSKVVRLLYTNSGAGLLALGSNGVQKLWKWARSEQNPNGKATASVVPQHWQPNSGLLMTNDVLGVNLDEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPPSTFLAFHPQDNNIIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPAGKAPIGDTRVQFHSDQIRLLVAHETQLAIYEASKMDRIRQWVPQDVLAAPISYAAYSCNSQLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPAALSGNQSVYPLVVAAHPLEPNQFAVGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASSSTTNNHTPDQAQR 1155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g0413 1155 PANTHER PROTEIN, PUTATIVE-RELATED 469 1155 - -
Ssu4g0413 1155 PANTHER PROTEIN, PUTATIVE-RELATED 1 449 - -
Ssu4g0413 1155 ProSiteProfiles Trp-Asp (WD) repeats profile. 615 646 IPR001680 GO:0005515
Ssu4g0413 1155 ProSiteProfiles LIS1 homology (LisH) motif profile. 4 36 IPR006594 GO:0005515
Ssu4g0413 1155 MobiDBLite consensus disorder prediction 730 757 - -
Ssu4g0413 1155 Gene3D - 586 696 IPR015943 GO:0005515
Ssu4g0413 1155 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 506 IPR001680 GO:0005515
Ssu4g0413 1155 ProSiteProfiles Trp-Asp (WD) repeats profile. 937 978 IPR001680 GO:0005515
Ssu4g0413 1155 MobiDBLite consensus disorder prediction 1118 1155 - -
Ssu4g0413 1155 Gene3D - 319 585 IPR015943 GO:0005515
Ssu4g0413 1155 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 34 92 IPR006595 -
Ssu4g0413 1155 Pfam WD domain, G-beta repeat 468 505 IPR001680 GO:0005515
Ssu4g0413 1155 Pfam WD domain, G-beta repeat 936 969 IPR001680 GO:0005515
Ssu4g0413 1155 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 469 1155 IPR027728 GO:0006355
Ssu4g0413 1155 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 1 449 IPR027728 GO:0006355
Ssu4g0413 1155 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 937 972 - -
Ssu4g0413 1155 SMART ctlh 34 92 IPR006595 -
Ssu4g0413 1155 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 375 IPR001680 GO:0005515
Ssu4g0413 1155 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 534 974 IPR011047 -
Ssu4g0413 1155 Gene3D - 786 1127 IPR015943 GO:0005515
Ssu4g0413 1155 SUPERFAMILY TolB, C-terminal domain 330 595 - -
Ssu4g0413 1155 ProSitePatterns Trp-Asp (WD) repeats signature. 492 506 IPR019775 -
Ssu4g0413 1155 SMART Lish 4 36 IPR006594 GO:0005515
Ssu4g0413 1155 SUPERFAMILY YVTN repeat-like/Quinoprotein amine dehydrogenase 956 1126 IPR011044 -
Ssu4g0413 1155 MobiDBLite consensus disorder prediction 1136 1155 - -
Ssu4g0413 1155 SMART WD40_4 930 969 IPR001680 GO:0005515
Ssu4g0413 1155 SMART WD40_4 887 927 IPR001680 GO:0005515
Ssu4g0413 1155 SMART WD40_4 1025 1061 IPR001680 GO:0005515
Ssu4g0413 1155 SMART WD40_4 335 374 IPR001680 GO:0005515
Ssu4g0413 1155 SMART WD40_4 1075 1116 IPR001680 GO:0005515
Ssu4g0413 1155 SMART WD40_4 597 637 IPR001680 GO:0005515
Ssu4g0413 1155 SMART WD40_4 848 884 IPR001680 GO:0005515
Ssu4g0413 1155 SMART WD40_4 507 548 IPR001680 GO:0005515
Ssu4g0413 1155 SMART WD40_4 464 505 IPR001680 GO:0005515
Ssu4g0413 1155 SMART WD40_4 551 594 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g0413 Ssu-Chr4 6730424 6739822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g0413 360 581 Miscellaneous Gene Families AT5G08390 25.974 4.12e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g0413 - - gmx:100808421 2090.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g0413 4 6730424 6739822 Ssu7g1763 7 36055036 36063400 PCT