Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1213 ATGGCCAGGGGCGAGAAGAAACCGGCGGAGAAAAAGCCGGCGGAGAAGGCTCCGGCGGAGAAGACCAAGGGCGAGAAGAAGATCCCGAAGGAGGCCGGCTCCGGCGacaagaggaagaagaggaaggcGAAGAGCGTGGAGACGTACAAGATCTACATCTTCAGGGTGCTGAAGCAGGTGCACCCCGACATCGGGATCTCCAGCAAGGCCATGGTGATCATGAACAGCTTCATCAATGACATATTCGAGAAGCTCGCTCAGGAAGCTTCTAGACTCGCCCGCTACAACAAGAAGCCTACCATCACCTCCCGCGAGATCCAGACCGCGGTTCGCCTCGTCCTCCCTGGGGAGCTTGCCAAGCACGCTGTGTCTGAAGGCACCAAGGCCGTCACCAAATTCACCAGCTCTTGA 411 0.5547 MARGEKKPAEKKPAEKAPAEKTKGEKKIPKEAGSGDKRKKRKAKSVETYKIYIFRVLKQVHPDIGISSKAMVIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1213 136 ProSitePatterns Histone H2B signature. 104 126 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu7g1213 136 Pfam Core histone H2A/H2B/H3/H4 6 112 IPR007125 GO:0003677
Ssu7g1213 136 Gene3D Histone, subunit A 6 136 IPR009072 GO:0046982
Ssu7g1213 136 SUPERFAMILY Histone-fold 23 136 IPR009072 GO:0046982
Ssu7g1213 136 PANTHER HISTONE H2B 4 136 - -
Ssu7g1213 136 PANTHER HISTONE H2B 4 136 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu7g1213 136 PRINTS Histone H2B signature 120 133 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu7g1213 136 PRINTS Histone H2B signature 90 107 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu7g1213 136 PRINTS Histone H2B signature 49 67 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu7g1213 136 PRINTS Histone H2B signature 107 120 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu7g1213 136 PRINTS Histone H2B signature 68 88 IPR000558 GO:0000786|GO:0003677|GO:0030527
Ssu7g1213 136 MobiDBLite consensus disorder prediction 1 44 - -
Ssu7g1213 136 SMART h2b3 39 135 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1213 Ssu-Chr7 26864971 26865381 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1213 K11252 - gmx:100305731 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1578 4 27052438 27059630 Ssu7g1213 7 26864971 26865381 ECH
Ssu7g1213 7 26864971 26865381 Ssu7g1213 7 26864971 26865381 ECH